Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1745 ATGGGTGGGAGGAAGAAGAGCAATGGCTCTGTACGGTCCATTTTCATGCATGCCGACGCTGCAGATTTGTGGTTGATGGCTTTCGGGTTCCTCGGAGCTCTGGGTGATGGGTTTTCCATGCCGGTGGTTTTGTATGTGACCAGCGAGATTATGAATAATATCGGCAGTTCCTCAACTTCTGCTGCTGATGCCTTCGTTGATAAAATCAACAAGAATGCAGTGACTTTGCTGTACATTGCTTGTGGGTCATGGGTTGCTTGTTTCCTAGAGGGTTATTGCTGGTCAAGAACAGCAGAGAGACAAGCCACAAGGATGAGGGCTAGATATCTGAAAGCAGTGCTGAGGCAGGACGTGGGCTATTTCGATTTGCATGTGACCAGCACAGCAGAGGTCATCACCAGCGTCTCCAACGATAGTCTCGTGATTCAAGATGTTCTTAGCGAAAAGGTCCCAAACTTCTTGATGAACGCTGCGACTTTCTTAGGAAGCTACATAGCGGCCTTCGCTATGCTGTGGAGGCTAGCTATTGTGGGCTTTCCCTTTGTCGTTGTTCTTGTGATTCCTGGGTTGATGTACGGACGGACACTGATGGGCCTGGCGAGGACGATCAGGGAAGAGTACAATAAGGCTGGTACCATAGCAGAGCAGGCCATCTCTTCCATCAGAACCGTTTACTCCTTTGTTGGAGAGAGCAAAACCCGGTCTGATTTCTCTGCAGCTCTCCAAGGCTCTGTGAAATTGGGTCTGCGCCAGGGTTTGGCCAAGGGCTTGGCCATTGGCAGCAACGGTATCGTTTTTGCCATATGGTCTTTCATGAGTTGGTACGGTAGCAGAATGGTCATGTATCACGGAGCTCGTGGAGGAACTGTTTTCGTCGTAGGGGCTGCCATCGCTGTCGGTGGACTATCACTGGGTGCCGGATTATCCAACCTGAAGTACTTCTCGGAAGCATGCTCAGCCGGAGAGCGAATAATGGAGATGATAAAAAGAGTCCCAAAGATCGATTCAGACAACATGGAGGGCCAAATCCTAGAAAACGTATCTGGGGAAGTGGAATTCAGACACGTAGAATTCGCGTACCCATCACGGCCGGAGAGCATAATTTTTAAAGACTTCAATCTGAAGATCCCGGCGGGGAAAACAGTGGCATTGGTCGGAGGCAGCGGGTCCGGAAAGTCCACAGCGATATCTCTGTTGCAGAGGTTTTATGACCCACTTGGTGGGGAGATTCTTCTTGATGGGGTGGCCATTGATAAGCTACAGCTCAAGTGGGTGAGGTCACAGATGGGCTTAGTGAGCCAAGAACCAGCACTTTTTGCAACCACCATTAAAGAGAACATACTTTTCGGAAAAGAGGACGCTGTAATGGAGGAGGTAGTTGCTGCTGCCAAAGCTTCTAATGCTCATAATTTCATTTGTCAGTTGCCTCAAGGGTATGATACCCAGGTGGGGGAGAGAGGAGTTCAAATGTCTGGAGGCCAAAAACAGAGAATCGCCATTGCACGCGCCATCATCAAAGCCCCACAAATCCTCCTCCTCGACGAGGCAACCAGCGCGTTAGACTCCGAGTCGGAGCGAGTCGTCCAAGAAGCCCTAGACAATGCGGCCGTTGGCCGCACCACCATCATCATCGCCCACCGCCTCTCCACCATCCGCAACGCGGACATCATCACTGTCGTCCAGAATGGCCAGATCATGGAGACCGGCTCTCACGACGACCTCATCCAGAACGACGACGGACTCTACACTTCCCTCGTCCGCCTCCAGCAAACCGAGAAGTCGGAGGCCCCTTCACTCCCGATCTCCTCAACCGCCGCGATCTCAACCAGCATGGATCTCCACAGCACCAGCAGCCGCAGGCTCTCTCTTGTCAGCCGCTCGAGTTCCGCCAACTCAAACGCACCAAGCCGGCCCGCCGGAGAAGTATTCACTGCGGCGGAGCAAGACTTTCCGGTGCCGTCTTTCCGGAGACTGCTGGCAATGAACCTTCCTGAGTGGAAGCAAGCTAGCATGGGATGTTTGAGTGCAGTCTTGTTTGGTGCCGTTCAACCAGTGTATGCATTCGCAATGGGATCGATGATATCGGTTTATTTCTTCCCTGAACATGATGAAATCAAAAAAAAAACCAGAACATATGCGCTTTGTTTTGTTGGATTGGCTGTGTTCTCCTTCCTGGTAAATATCAGCCAACATTACAATTTTGCAGCCATGGGAGAGTACCTGACCAAGCGGGTGAGAGAGAGGATGTTTTCAAAGATTCTGACTTTTGAAGTAGGGTGGTTTGACCAAGACCAGAACTCCACTGGTGCCATTTGCTCTAGGCTCGCCAAAGATGCCAATGTGGTGAGATCATTAGTGGGTGATCGAATGGCGCTTCTTGTCCAAACCTTCTCAGCTGTGATCATCGCCTGCACAATGGGTCTGGTCATTGCGTGGAGACTTGCTGTGGTGATGATAGCGGTTCAACCGCTGATTATAGTCTGCTACTACACAAGACGGGTGCTTCTCAAAAGCATGTCCGCTAAGGGTATCAAGGCCCAAGAAGAAAGCAGCAAGCTTGCCGCTGAAGCAGTCTCTAATCTCCGAATCATCACAGCCTTTTCATCCCAAGCCCGAATCCTGAAAATGCTTGAGGCCGCACAGGAAGGTCCCCTACGGGAAAGTATCCGTCAATCATGGTTCGCTGGGATCGGACTCGGAACCTCCCAAAGCCTCATGACATGTACTTGGGCTCTGGATTTTTGGTATGGGGGTAAGTTAATCTCACAAGGCTATATTTCATCAAAAGCATTGTTTGAGACATTCATGATCTTAGTAAGCACCGGCCGTGTCATTGCCGATGCCGGAAGCATGACCAGTGATCTCGCCAAAGGGTCGGACGCGGTTGGTTCGGTTTTCGCAGTCCTTGACCGCTACACACGAATAGAACCCGAAGATCCCGATGGTCACCAACCCGAAAAAATAATTGGTCGAGTTGAAATTCGTGATGTGGACTTTGCTTACCCGGCTAGACCTGATGTACTTGTGTTTAAAAGCTTCTCAATCAATATAGACGCCGGAAAATCAACGGCACTTGTAGGACAGAGTGGGTCTGGCAAGTCAACTATCATTGGATTAATAGAAAGATTCTACGACCCACTCCAAGGAAGCGTCAAAATCGACGGTAAAGATATAAGGTCCTATCACCTTAGAGTACTAAGGAAACACATCGCACTAGTGAGTCAAGAGCCCACACTGTTCGCAGGCACCATAAGAGAAAACATTGCTTACGGCGCATCTGATAAAATCGACGAATCAGAAATCATCGAAGCCGCAAGGGCAGCCAACGCTCACGATTTCATTGCGGGACTAAAAAATGGCTATGATACGTGGTGTGGTGACAGAGGAGTACAACTCTCCGGTGGGCAGAAGCAGCGTGTCGCTATAGCCCGCGCCATACTAAAAAACCCGGCGGTGCTGTTGCTTGACGAAGCTACGAGCGCACTGGATAGCCAATCAGAGAAGGTGGTGCAGGATGCTCTGGAGCGCGTGATGGTGGGGCGGACGAGTGTGGTGGTGGCCCACAGGCTGAGTACCATACAGAATTGTGATCTCATAGCGGTTTTGGATAAAGGAAAAGTGGTGGAGAAAGGGACCCACTCATCCTTGTTAGGAAAAGGCCCCAGTGGTGCGTACTACTCGCTAGTGAACCTCCAAAGGAGGCCCAACACCTCCAACATGGTCAACTAG 3729 0.506 MGGRKKSNGSVRSIFMHADAADLWLMAFGFLGALGDGFSMPVVLYVTSEIMNNIGSSSTSAADAFVDKINKNAVTLLYIACGSWVACFLEGYCWSRTAERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDVLSEKVPNFLMNAATFLGSYIAAFAMLWRLAIVGFPFVVVLVIPGLMYGRTLMGLARTIREEYNKAGTIAEQAISSIRTVYSFVGESKTRSDFSAALQGSVKLGLRQGLAKGLAIGSNGIVFAIWSFMSWYGSRMVMYHGARGGTVFVVGAAIAVGGLSLGAGLSNLKYFSEACSAGERIMEMIKRVPKIDSDNMEGQILENVSGEVEFRHVEFAYPSRPESIIFKDFNLKIPAGKTVALVGGSGSGKSTAISLLQRFYDPLGGEILLDGVAIDKLQLKWVRSQMGLVSQEPALFATTIKENILFGKEDAVMEEVVAAAKASNAHNFICQLPQGYDTQVGERGVQMSGGQKQRIAIARAIIKAPQILLLDEATSALDSESERVVQEALDNAAVGRTTIIIAHRLSTIRNADIITVVQNGQIMETGSHDDLIQNDDGLYTSLVRLQQTEKSEAPSLPISSTAAISTSMDLHSTSSRRLSLVSRSSSANSNAPSRPAGEVFTAAEQDFPVPSFRRLLAMNLPEWKQASMGCLSAVLFGAVQPVYAFAMGSMISVYFFPEHDEIKKKTRTYALCFVGLAVFSFLVNISQHYNFAAMGEYLTKRVRERMFSKILTFEVGWFDQDQNSTGAICSRLAKDANVVRSLVGDRMALLVQTFSAVIIACTMGLVIAWRLAVVMIAVQPLIIVCYYTRRVLLKSMSAKGIKAQEESSKLAAEAVSNLRIITAFSSQARILKMLEAAQEGPLRESIRQSWFAGIGLGTSQSLMTCTWALDFWYGGKLISQGYISSKALFETFMILVSTGRVIADAGSMTSDLAKGSDAVGSVFAVLDRYTRIEPEDPDGHQPEKIIGRVEIRDVDFAYPARPDVLVFKSFSINIDAGKSTALVGQSGSGKSTIIGLIERFYDPLQGSVKIDGKDIRSYHLRVLRKHIALVSQEPTLFAGTIRENIAYGASDKIDESEIIEAARAANAHDFIAGLKNGYDTWCGDRGVQLSGGQKQRVAIARAILKNPAVLLLDEATSALDSQSEKVVQDALERVMVGRTSVVVAHRLSTIQNCDLIAVLDKGKVVEKGTHSSLLGKGPSGAYYSLVNLQRRPNTSNMVN* 1243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1745 1242 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 982 1232 IPR027417 -
Vvi14g1745 1242 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 27 316 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi14g1745 1242 SMART AAA_5 378 564 IPR003593 GO:0016887
Vvi14g1745 1242 SMART AAA_5 1019 1212 IPR003593 GO:0016887
Vvi14g1745 1242 CDD ABC_6TM_Pgp_ABCB1_D2_like 659 975 - -
Vvi14g1745 1242 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 343 589 IPR027417 -
Vvi14g1745 1242 ProSitePatterns ABC transporters family signature. 490 504 IPR017871 GO:0005524|GO:0016887
Vvi14g1745 1242 Gene3D - 341 590 IPR027417 -
Vvi14g1745 1242 Gene3D ABC transporter type 1, transmembrane domain 14 960 IPR036640 GO:0005524|GO:0016020
Vvi14g1745 1242 CDD ABC_MTABC3_MDL1_MDL2 351 589 - -
Vvi14g1745 1242 ProSitePatterns ABC transporters family signature. 1132 1146 IPR017871 GO:0005524|GO:0016887
Vvi14g1745 1242 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 351 587 IPR003439 GO:0005524
Vvi14g1745 1242 FunFam ABC transporter B family member 4 341 595 - -
Vvi14g1745 1242 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 672 957 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi14g1745 1242 Pfam ABC transporter 1011 1160 IPR003439 GO:0005524
Vvi14g1745 1242 FunFam Putative ABC transporter B family member 8 639 980 - -
Vvi14g1745 1242 Pfam ABC transporter transmembrane region 671 939 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi14g1745 1242 Pfam ABC transporter transmembrane region 27 292 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi14g1745 1242 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 992 1229 IPR003439 GO:0005524
Vvi14g1745 1242 Pfam ABC transporter 370 518 IPR003439 GO:0005524
Vvi14g1745 1242 FunFam ABC transporter B family member 1 13 350 - -
Vvi14g1745 1242 Gene3D - 982 1240 IPR027417 -
Vvi14g1745 1242 SUPERFAMILY ABC transporter transmembrane region 653 971 IPR036640 GO:0005524|GO:0016020
Vvi14g1745 1242 PANTHER ABC TRANSPORTER B FAMILY 4 721 IPR039421 -
Vvi14g1745 1242 CDD ABC_6TM_Pgp_ABCB1_D1_like 26 324 - -
Vvi14g1745 1242 SUPERFAMILY ABC transporter transmembrane region 22 335 IPR036640 GO:0005524|GO:0016020
Vvi14g1745 1242 FunFam ABC transporter B family member 4 982 1238 - -
Vvi14g1745 1242 CDD ABC_MTABC3_MDL1_MDL2 992 1232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1745 Vvi-Chr14 28532844 28538365 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1745 671 1242 Calmodulin-binding Proteins AT2G36910 36.585 2.54e-114 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1745 K05658 - vvi:100854950 2298.09