Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1744 ATGTCGGGAGTGCAGAAGCAAAGAATCTCCATTGCACCCGCCATCATCAAAGCCCCACAAATCCTCCTCCTCGACGAGGCAACCAACGCCACCAGTATTTGTAGTCTATCCGTGGTCAGCCACTCGAGTTTCGCCAACTCAAACACACCAAGCCGACTTGCGGGAGAAATAGCCACTATGACGAAGCAAGACTTTCCGGTGTCGTCGTTCTGGAGATTGCTGGCAATGAACCTTCCTGAGTGGAAACAAGCTAGCATGGGATGTTTGAGTGCAATCTTGTTTGGTATGGTTCAGCCGGTGTACGCATTCGTAATGGGATCGATGATATCGGTTTATTTCTTGCCTGAGCATGACGAAATCACCATGGGAAAACACTTGACCAAGCAGGTGGAGAAGATGATGTTTTCAAAGATACTGACTTTTGAAGTAGGGTGGTTTGACAAAAACCAGAACTGCATTGGTGCCATTTGCTCTTGGCTCGCCAAAGATGCCAATGTGGTTTTGATTTTAATAATATTTTCATATGAGAGGATAATAGCCAAACTTTCCCCAAGGAAAAGTGGTGGAGAAAGGGACCCACTCATCCTTGTTAGGAAAAGACCCCAGTGGGGCGTACTACTCGCTGGTGAACCTCCAGATGAGGTCCAACACCACCAACATGGTCAACTAGAGGGCGAAGATAAGATGCCTTTGCGATGA 699 0.4735 MSGVQKQRISIAPAIIKAPQILLLDEATNATSICSLSVVSHSSFANSNTPSRLAGEIATMTKQDFPVSSFWRLLAMNLPEWKQASMGCLSAILFGMVQPVYAFVMGSMISVYFLPEHDEITMGKHLTKQVEKMMFSKILTFEVGWFDKNQNCIGAICSWLAKDANVVLILIIFSYERIIAKLSPRKSGGERDPLILVRKRPQWGVLLAGEPPDEVQHHQHGQLEGEDKMPLR* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1744 232 Gene3D - 1 35 IPR027417 -
Vvi14g1744 232 Pfam ABC transporter 1 29 IPR003439 GO:0005524
Vvi14g1744 232 SUPERFAMILY ABC transporter transmembrane region 72 174 IPR036640 GO:0005524|GO:0016020
Vvi14g1744 232 Gene3D ABC transporter type 1, transmembrane domain 52 182 IPR036640 GO:0005524|GO:0016020
Vvi14g1744 232 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 1 30 IPR039421 -
Vvi14g1744 232 MobiDBLite consensus disorder prediction 211 232 - -
Vvi14g1744 232 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 31 IPR027417 -
Vvi14g1744 232 MobiDBLite consensus disorder prediction 213 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1744 Vvi-Chr14 28506653 28511944 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1744 1 65 Calmodulin-binding Proteins AT2G36910 43.284 4.66e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1744 K05658 - vvi:100854950 194.512