Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1742 ATGGGAGAGCACTTGACCAAGCAAGTGAAGGACATGATGTTTTCAAAGATACTGACTTTTGAAGTAGGGTGGTTTGACCAAAACCAGAACTCCACTGGTGCCATTTGCTCCTGGCTCGCCAAAGATGCCAATGTGGTGAGATCATTGGTGGGTGATCGAATGGCACTTGTTGTCCAAACCTTCTCAGTTTTGATCATCGCTTGTGCAATGGGTCTGATCATTGCGTGGAGACTTGTTGTGGTGATGATAGCGGTTCAACCGCTCATTATAGTCTACTACTACACCAGACGGGTGCTTCTCAAAAGCATGTCCGCTAAGGCTATCAAGGCCCAAGAAGAAAGCAACAAGCTCGCAGCCGAAGCGGTATCTAATCTCTGA 378 0.4735 MGEHLTKQVKDMMFSKILTFEVGWFDQNQNSTGAICSWLAKDANVVRSLVGDRMALVVQTFSVLIIACAMGLIIAWRLVVVMIAVQPLIIVYYYTRRVLLKSMSAKAIKAQEESNKLAAEAVSNL* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1742 125 SUPERFAMILY ABC transporter transmembrane region 2 124 IPR036640 GO:0005524|GO:0016020
Vvi14g1742 125 Coils Coil 100 120 - -
Vvi14g1742 125 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 1 125 IPR039421 -
Vvi14g1742 125 Pfam ABC transporter transmembrane region 1 125 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi14g1742 125 Gene3D ABC transporter type 1, transmembrane domain 1 125 IPR036640 GO:0005524|GO:0016020
Vvi14g1742 125 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 125 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1742 Vvi-Chr14 28498229 28499243 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1742 1 125 Calmodulin-binding Proteins AT2G36910 36.800 1.03e-23 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1742 K05658 - vvi:100854950 212.616