Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1741 ATGGGCCTAGTGAGCCAAGAACCAGCACTTTTTGCAACCACCATTAAAGAGAACATACTTTTCGGAAAAGAGGACGCTATCATGGAGGAGGTGGTTGCTGCTGCCAAAGCTTCAAATGCTCAAAATTTCATTTGTCAGTTGCCTCAGGGGTATGATACCCAGGTAGGGAAGAGAGGAGTTCAGATGTTAGGAGCACAGAAGCAAAGAATCGCCATTGCATCCGCCATCATCAAAGCCCCACAAATCCTCTTCCTCGATGAGGCAACCAACGCGTTAGACTTCGAGTTGGAGCGAGTTGTCCAAGAAGCCTTAGACAAAGCGGTCGTTGGCCGCACCACCATCATCACCGCCCACTGCTTCTCCACCATCCACAACGCGGACATCATCGTTGTCGTCCAGAATGGCTAG 408 0.5025 MGLVSQEPALFATTIKENILFGKEDAIMEEVVAAAKASNAQNFICQLPQGYDTQVGKRGVQMLGAQKQRIAIASAIIKAPQILFLDEATNALDFELERVVQEALDKAVVGRTTIITAHCFSTIHNADIIVVVQNG* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1741 135 Pfam ABC transporter 2 90 IPR003439 GO:0005524
Vvi14g1741 135 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 135 IPR027417 -
Vvi14g1741 135 PANTHER ABC TRANSPORTER B FAMILY 1 135 IPR039421 -
Vvi14g1741 135 Gene3D - 1 135 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1741 Vvi-Chr14 28494613 28495551 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1741 1 135 Calmodulin-binding Proteins AT2G36910 62.222 5.57e-51 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1741 K05658 - vvi:100854950 223.787