Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1740 ATGGCCTTCGGGTTCCTCGGGGCTCTGGGTGATGGGTTTTCCATGCCAGTGGTTTTGTATGTGACCAGCGAGATTATGAATAATATCGGAAGTTCCTCAACTTCTGCTGCTGATGCCTTCGTTGATAAAATCAACGAGGTCCTTTTGACTTTGTTGTACATTGCTTGTGGGTCATGGGTTGCTTGTTTCCTAGAGGGTTATTGCTGGTCAAGAACAGCAGAGAGACAAACCACAAGGATGAGGGCTAGATATCTGAAAGCAGTGCTGAGGCAGGACGTGGGCTATTTCGATTCGCATGTGACCAGCACAGCAGAGGTCATCACCAGCATCTCCAACGATACTCTCGTGATTCAAGATGTTCTTAGCGAAGGTTGGTTCTTTCAATGCTGCTGTGCGAGAAAAAAACCGATATCATCGATCCCATTGCGAAAGCGTACACCGGCTGAACCGCACCAAACAAGATTGCACTCAAACATCCCATGCTAG 486 0.4774 MAFGFLGALGDGFSMPVVLYVTSEIMNNIGSSSTSAADAFVDKINEVLLTLLYIACGSWVACFLEGYCWSRTAERQTTRMRARYLKAVLRQDVGYFDSHVTSTAEVITSISNDTLVIQDVLSEGWFFQCCCARKKPISSIPLRKRTPAEPHQTRLHSNIPC* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1740 161 Gene3D ABC transporter type 1, transmembrane domain 1 131 IPR036640 GO:0005524|GO:0016020
Vvi14g1740 161 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 2 123 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi14g1740 161 Pfam ABC transporter transmembrane region 2 123 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi14g1740 161 PANTHER ABC TRANSPORTER B FAMILY 1 124 IPR039421 -
Vvi14g1740 161 SUPERFAMILY ABC transporter transmembrane region 1 125 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1740 Vvi-Chr14 28492698 28493529 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1740 1 123 Calmodulin-binding Proteins AT2G36910 34.146 6.77e-21 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1740 K05658 - vvi:100854950 225.713