Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1729 ATGGTGAGACCTCCTTGTTGTGACAAATTGAACGTCAAGAGGGGCCTCTGGACAGCCGAGGAAGATGCAAAGATACTGGCATATGTATCCAAACATGGAATTGGTAACTGGACACTGGTCCCCAAGAAAGCAGGACTCAATAGATGTGGAAAGAGTTGTAGGCTAAGGTGGACTAACTACCTGAGGCCTGACCTCAAGCATGACAGCTTCACACCCCAAGAAGAAGACCTTATTGTTAACCTACACAAAGCTATAGGTAGCCGGTGGTCTTTGATTGCAAAGGAATTGCCTGGAAGAACAGACAATGATGTGAAAAACTACTGGAATACTAAGCTGAGGAAGAAGCTCACGAAGATGGGCATTGATCCTGTAACCCATAAGCCCTTTTCCCAAATCCTTACTGACTATGGCAACATCAGTGGTCTCCCCAACACCGCAACACGAATGGGGTCCTTCAGTAGGGGCCTGAACAACGCATCAGTATCAGTGTCAGGACTTTCATACACCAACATGAATGACCTTAAGCCATTGGTAGAGCAATTCCAGGTTCTCAACCAAGAAACTGTCCAACCACATTTCTTCAGTGAAGTCCCCTCGTCTTCATCCTCATCTTCTTCTTGTTCTAACGTCACCCAACTGAGCTCACCCCAATCCTTCCCTTGCCAACCATCTCAGGCTCAGTTTACACCATCTTCTCCCTTCAGCTGGAATGACTTTCTTCTCGGAGACCCTTTTCTTCCCACTGATTTGCAGCAACAAGAAGAGTGTGATCCCCGGGGGACCTTCTCATCAACTAGCCCTTCACTTGTAACACAAAATGAGTTCCCCTACTGCAAGTTTAATGGACTTGGATACAAGGATTCCAACGCATTTCAGTATGGTGCAACTACTGGAGATGACATGGGAAACTCCCACAAAGCTTCTTCATCTCCTGCAAGTTCATTTGTTGAATCCATCTTGGACCGAGACAGCGAGATGCGTGCCAAATTGCCCGAACTTTTGGGTGAATCCTTTGATTACTTGATCATGAATACTTTGGAGAGATCATCCGTTTCCTTCCGCCGACAGGGCTCCTCCGGCCGCATTTGGGACAACCAGTTTCAGGCAATAGGGCAAAAGGCTGATGTGCCGCAGGCTGCAGCCATGGCTACCAGAAAAAGGCAGGAGGTGACATTCCAGGAAATGGAGAATCAGACCCCCCGTTCACGGTCTGGGAATTCAACCCCCCCACCTTCTAATTCTCGAGACAAGGGTCAAAGGTGTGCATTCTCAGCTGTTTTCGGGCGATGTATTGGGACTCGGACCCCCTGA 1311 0.4821 MVRPPCCDKLNVKRGLWTAEEDAKILAYVSKHGIGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLKHDSFTPQEEDLIVNLHKAIGSRWSLIAKELPGRTDNDVKNYWNTKLRKKLTKMGIDPVTHKPFSQILTDYGNISGLPNTATRMGSFSRGLNNASVSVSGLSYTNMNDLKPLVEQFQVLNQETVQPHFFSEVPSSSSSSSSCSNVTQLSSPQSFPCQPSQAQFTPSSPFSWNDFLLGDPFLPTDLQQQEECDPRGTFSSTSPSLVTQNEFPYCKFNGLGYKDSNAFQYGATTGDDMGNSHKASSSPASSFVESILDRDSEMRAKLPELLGESFDYLIMNTLERSSVSFRRQGSSGRIWDNQFQAIGQKADVPQAAAMATRKRQEVTFQEMENQTPRSRSGNSTPPPSNSRDKGQRCAFSAVFGRCIGTRTP* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1729 436 Gene3D - 68 128 - -
Vvi14g1729 436 CDD SANT 69 112 IPR001005 -
Vvi14g1729 436 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vvi14g1729 436 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
Vvi14g1729 436 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vvi14g1729 436 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Vvi14g1729 436 CDD SANT 17 61 IPR001005 -
Vvi14g1729 436 Gene3D - 7 67 - -
Vvi14g1729 436 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Vvi14g1729 436 PANTHER F14D16.11-RELATED 1 340 - -
Vvi14g1729 436 MobiDBLite consensus disorder prediction 389 420 - -
Vvi14g1729 436 MobiDBLite consensus disorder prediction 393 419 - -
Vvi14g1729 436 FunFam transcription factor MYB80 69 129 - -
Vvi14g1729 436 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vvi14g1729 436 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vvi14g1729 436 FunFam Transcription factor RAX3 7 67 - -
Vvi14g1729 436 Pfam Domain of unknown function (DUF4666) 343 419 IPR031421 -
Vvi14g1729 436 SMART sant 13 63 IPR001005 -
Vvi14g1729 436 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1729 Vvi-Chr14 28398976 28401534 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1729 1 340 MYB Transcription Factor Family AT3G28470 48.286 2.15e-89 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi14g1729 DUF4666 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1729 K09422 - vvi:100249216 682.945