Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1726 ATGGGTAATCAGGCCACTGGCGATGATGACAGCGTCAGTAGCAGTACTGTTACTAACTCTGATAATAATGCGATTAGCAATGTTGTCGATGAGGCAACCGAAAATCTGGAGAGTGCTGAGATTAACAATGGTGCAGATGAAACGACTAAGAATGTAGAGATTAGCAATGCGGAGGACGAAGCGAAGAAAGATGTGGAAACTACTGAGATTAGCAACGGGGATGCGGCTGAAGCAACCGAAAATGGGGAAAGTGTGGATTGTGTTGAAAGCGAGAAGAGTAGTTTGAGTTCCGCGAGTTATTCTAACAGTTCTGACGCCAATGAGACCAATTTCAGAAGTTTCTGCGCGTCGAAGCCCCATAGAGGCAACGACATCCGATGGGATGCGATACAGTGCGTCAAGGCTAAAGATGGGGACATGGGTTTGTGCCACTTTAGGCTTTTGAAGAAGCTGGGATGTGGGGATATTGGGAGTGTGTATTTGGCTGAACTGAGAGGAATGAGCTGTTTGTTTGCCATGAAGGTGATGGACAAAGGGATGCTAGAAGAGAGGAAGAAGTTGATGAGAGCCCAGACTGAGAGAGAAATATTGGGTTTGTTGGATCACCCATTTCTTCCAACCCTTTACTCGCATTTCGAAACGGAGAAGTTTTCTTGTTTATTGATGGAGTTCTGCAGCGGTGGGGATCTTCACACGCTGAGGCAGAGGCAACCGGGCAAGCATTTTTCTGAACAAGCAGCTAGGTTTTATGCTTCAGAAGTGCTTCTTGCTCTTGAGTATCTGCACATGTTGGGGGTGGTTTATAGAGATTTAAAGCCTGAAAATGTTTTGGTGAGGGAGGATGGCCACATCATGCTCTCAGATTTTGACTTATCGCTGAGATGCTATGTGAGTCCCACCCTTGTTCAAACCAGCAGTGACCCATCATTTAGGATATCTTCATACTGCATCCAGCCATCTTGCATTGATCCTGCATGCAAATTATCAGTCTGTGTAGAGCCCTCTTGCTTGCAGCCCTCTTGCTTTAAGCCTCGGCTGTTTAAGGCTAAATCAAGGAAGCCCAGAAGTGAAAGATTAAGTTTGACAAATCTAGATTCACTTCCTATGCTGATTGCAGAACCAACTGGTGCCCGCTCCATGTCATTTGTTGGGACCCATGAATATTTAGCTCCTGAAATAATCAGAGGGGATGGTCATGGTAGTGCTGTTGATTGGTGGACTTTTGGTATTTTCTTGTATGAGTTACTACATGGGAGGACACCATTTAAAGGCAATGGGAACCGAGAGACATTGTTCAATGTTGTTGGCCAGTCTCTGAAGTTTGCTGAAGGATCCTCTATTAGTTTTGCTGCCAAGGACTTGATACGGGGTTTGCTTGTAAAGGATCCACAGAAGAGATTAGGATACAAAAGAGGTGCCACAGAGATCAAGCAGCATCCCTTCTTTGAAAGTGTCAACTGGGCTCTCATTCGCAGTACTCACCCTCCTCAAATCCCTAAACCTGTTGATCTTGAATGTCTTAATCACACATCATCCTCATCCATGCGTCTAAATGACAAGGGAGCTACGGACTCAGATAGATCATCAGGTCCTTACTTAGATTTTGAATTTTTCTAA 1617 0.449 MGNQATGDDDSVSSSTVTNSDNNAISNVVDEATENLESAEINNGADETTKNVEISNAEDEAKKDVETTEISNGDAAEATENGESVDCVESEKSSLSSASYSNSSDANETNFRSFCASKPHRGNDIRWDAIQCVKAKDGDMGLCHFRLLKKLGCGDIGSVYLAELRGMSCLFAMKVMDKGMLEERKKLMRAQTEREILGLLDHPFLPTLYSHFETEKFSCLLMEFCSGGDLHTLRQRQPGKHFSEQAARFYASEVLLALEYLHMLGVVYRDLKPENVLVREDGHIMLSDFDLSLRCYVSPTLVQTSSDPSFRISSYCIQPSCIDPACKLSVCVEPSCLQPSCFKPRLFKAKSRKPRSERLSLTNLDSLPMLIAEPTGARSMSFVGTHEYLAPEIIRGDGHGSAVDWWTFGIFLYELLHGRTPFKGNGNRETLFNVVGQSLKFAEGSSISFAAKDLIRGLLVKDPQKRLGYKRGATEIKQHPFFESVNWALIRSTHPPQIPKPVDLECLNHTSSSSMRLNDKGATDSDRSSGPYLDFEFF* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1726 538 SMART serkin_6 145 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g1726 538 Gene3D Transferase(Phosphotransferase) domain 1 225 294 - -
Vvi14g1726 538 FunFam serine/threonine-protein kinase D6PK-like 377 500 - -
Vvi14g1726 538 FunFam serine/threonine-protein kinase D6PK-like 229 296 - -
Vvi14g1726 538 Gene3D Phosphorylase Kinase; domain 1 144 224 - -
Vvi14g1726 538 MobiDBLite consensus disorder prediction 1 91 - -
Vvi14g1726 538 MobiDBLite consensus disorder prediction 1 51 - -
Vvi14g1726 538 Gene3D Transferase(Phosphotransferase) domain 1 377 500 - -
Vvi14g1726 538 Coils Coil 22 42 - -
Vvi14g1726 538 MobiDBLite consensus disorder prediction 52 70 - -
Vvi14g1726 538 SUPERFAMILY Protein kinase-like (PK-like) 124 510 IPR011009 -
Vvi14g1726 538 PANTHER FLIPPASE KINASE 1-RELATED 21 505 - -
Vvi14g1726 538 CDD STKc_phototropin_like 144 505 - -
Vvi14g1726 538 Pfam Protein kinase domain 146 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g1726 538 Pfam Protein kinase domain 379 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g1726 538 ProSitePatterns Serine/Threonine protein kinases active-site signature. 266 278 IPR008271 GO:0004672|GO:0006468
Vvi14g1726 538 FunFam Serine/threonine-protein kinase D6PK-like 143 228 - -
Vvi14g1726 538 ProSiteProfiles Protein kinase domain profile. 145 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1726 Vvi-Chr14 28373513 28375989 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1726 101 538 AGC Kinase Gene Family AT5G40030 78.864 0.0 720
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vvi14g1726 Pkinase 1.1e-36 CL0016