Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1700 ATGGAGTTTCAGGAGGCTTTGTTGAGGTATTTGAATAAACCAGAGGAGGGGAAAGGGGTTTGTGGAAAGGAAGGTCGTAAGGAGATGGGTAATGGGAAGCAGAGGTGGAGGGTGTTTTACAAGTCGTCTTCTTCTTCCAATGCGTCAAAACGCCAGTCCAAGGAACCGCCCAAGGAGTTTCTGTGTCCCATTTCTGGGTCTCTAATGGCTGACCCAGTTATCGTCTCTTCCGGCCAGACGTTCGAGCGTGCCTGCGTTCAGGTCTGTAAAGCTTTAGGGTTTAACCCCACTCTCTCCGAGGGTTCTTCGCCTGATTTCTCCACAATCATTCCCAACCTCGCCATACAATCCACCATTCTAAGCTGGTGCGACAAGTGTTCCGTGGACCGACCCAAGCCACTCGACTTCGACTCTGCAGAGAAGGTCGTCCGTACACTTATGGCGTCCCAGAAAGCAGAGAACAAAAGCGAGGATTCGGACAAGGAGTTGATCAAAGCGGTTGGAGAGACTCCTCCTGTTTTGAAGTTCGCTCACGCCATCACTGACTTGAATCGCCGTTCCACTCACTTCTACTCAAGCTCGCAGGAATCGGTGACCACCACCGGTTCGACTCCGCCTCTGCCCCTTGCGACTCGGCCGAGTTGCTATTCTTCTTCATCCTCTTCCGAGATTGAAACCCTAAACCCCGATTCGCCGGAGGAGGACGAAGGCATCATCGCGAAGCTCAAGAGCCCTCAGGTTTTCGAGCAAGAAGAAGCTTTGGTTTCACTGAGAAAGATCACCAGAACCGGCGAAGAAACTAGGGTTTCTCTCTGCAGTCCTCGACTGCTCTCAATGCTACGATCGTTGATCATCTCGAGATACTCCGGAATTCAGGTGAACGCAGTAGCAGTTCTGGTGAACCTCTCCCTAGAGAAAATCAACAAGGTGAAAATCGTACGATCAGGGATCGTTCCACCGTTGATCGACGTCTTGAAGGGGGGATTCCCTGAAGCGCAGGACCACGCTGCCGGTGCACTCTTCAGCTTAGCTCTAGAAGACGCCAACAAAACCGCCATCGGAGTTTTAGGCGCGTTGCCGCCGCTTCTCCACACTCTTCGGTCTGAGAGTGAGCGAGCTCGGAACGACTCAGCACTCGCTCTCTATCATCTCTCACTCGTTCAGAGCAATCGAACCAAATTGGTGAAACTTGGGGCAGTTCAGATCCTTATGGGCATGGTGAATTCGGGTCATTTATGGAGTCGGGCCCTGCTGGTGCTCTGTAACTTGGCTGCTTGCCCAGATGGGAGGACAGCTATGCTGGATGCGGGTGCAGTGGAGTGTTTGGTGGGGTTGTTGAGGGGGAATGAGTTGGACTCCGACTCAATTCGGGAGAGTTGCCTGGCAGCGCTATATGCACTGAGCTTTGGTGGGTCGAGGTTCAAGGGGCTGGCGAAAGAGGCAGGGGCTATGGAGACATTGATGAGGGTGGAGAAAATAGGGAGTGAGCGGGCGAGAGAGAAGGCCAAGAAGATCCTGGAGATAATGAGGGAGAAAACCGAGGAAGGTCTGGACTGGGAGGCATTGCTTGATTCAGGGTTGGTGAGTCGAACAAGGTATTGGCCACTACAGGACAGGTCCAGTGTGAACTCATCCGAGTTCTAA 1644 0.528 MEFQEALLRYLNKPEEGKGVCGKEGRKEMGNGKQRWRVFYKSSSSSNASKRQSKEPPKEFLCPISGSLMADPVIVSSGQTFERACVQVCKALGFNPTLSEGSSPDFSTIIPNLAIQSTILSWCDKCSVDRPKPLDFDSAEKVVRTLMASQKAENKSEDSDKELIKAVGETPPVLKFAHAITDLNRRSTHFYSSSQESVTTTGSTPPLPLATRPSCYSSSSSSEIETLNPDSPEEDEGIIAKLKSPQVFEQEEALVSLRKITRTGEETRVSLCSPRLLSMLRSLIISRYSGIQVNAVAVLVNLSLEKINKVKIVRSGIVPPLIDVLKGGFPEAQDHAAGALFSLALEDANKTAIGVLGALPPLLHTLRSESERARNDSALALYHLSLVQSNRTKLVKLGAVQILMGMVNSGHLWSRALLVLCNLAACPDGRTAMLDAGAVECLVGLLRGNELDSDSIRESCLAALYALSFGGSRFKGLAKEAGAMETLMRVEKIGSERAREKAKKILEIMREKTEEGLDWEALLDSGLVSRTRYWPLQDRSSVNSSEF* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1700 547 PANTHER U BOX DOMAIN-CONTAINING 49 511 - -
Vvi14g1700 547 Coils Coil 495 515 - -
Vvi14g1700 547 Pfam Armadillo/beta-catenin-like repeat 308 344 IPR000225 GO:0005515
Vvi14g1700 547 SUPERFAMILY ARM repeat 239 511 IPR016024 -
Vvi14g1700 547 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 130 IPR013083 -
Vvi14g1700 547 Pfam U-box domain 57 124 IPR003613 GO:0004842|GO:0016567
Vvi14g1700 547 SMART arm_5 346 386 IPR000225 GO:0005515
Vvi14g1700 547 SMART arm_5 305 345 IPR000225 GO:0005515
Vvi14g1700 547 SMART arm_5 387 425 IPR000225 GO:0005515
Vvi14g1700 547 SMART arm_5 426 469 IPR000225 GO:0005515
Vvi14g1700 547 Gene3D - 232 508 IPR011989 -
Vvi14g1700 547 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 357 399 IPR000225 GO:0005515
Vvi14g1700 547 MobiDBLite consensus disorder prediction 191 234 - -
Vvi14g1700 547 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 316 353 IPR000225 GO:0005515
Vvi14g1700 547 ProSiteProfiles U-box domain profile. 55 129 IPR003613 GO:0004842|GO:0016567
Vvi14g1700 547 FunFam RING-type E3 ubiquitin transferase 37 130 - -
Vvi14g1700 547 MobiDBLite consensus disorder prediction 191 227 - -
Vvi14g1700 547 SUPERFAMILY RING/U-box 40 133 - -
Vvi14g1700 547 SMART Ubox_2 59 122 IPR003613 GO:0004842|GO:0016567
Vvi14g1700 547 FunFam RING-type E3 ubiquitin transferase 233 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1700 Vvi-Chr14 28168144 28169787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1700 26 547 U-box Gene Family AT5G40140 56.660 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1700 - - vvi:100255877 1020.38