Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi14g1699 | ATGGAGGCAGCCGCATTGTTTCTCCAAGATATAGCAATACTCCCAGAGATGGAAACAGGTGTGCTGGAGCATAGCCTTGCTGCTTCCAATCCTTTTTCTTCTAGTTTTGGAGATGAGGGTTTCTACTCTAAAGCCCTAATCAAAGGGAAGAAACTCAGATTGTTTGGCTTTGACGTGAATCCATGTGCAAATGATGGAAAGCGTTCAGTGGAGTCAGAGGAAGGAGATGAAAGTTTGAGTTCCTCTAACACACCTTCACCTTGGAAGGAGAAAACTCTCCAGGGAAAGAGTTCAACAAAGTTGCTGAAAGAGAGGAGGTACGCTTGCCAGTACTGTCGCAAAGAGTTTGCAAACTCGCAAGCGCTGGGAGGCCATCAGAATGCCCACAAAAAGGAGAGAGTGAAGAAGAAAAGAATGCAACTTGAGGCAAGACGGGCAAGCATCAACCAATATCTTCAGTCTTTCCAATCCCATCCAAGGTTTACCGAGCCCTCTTTCAGCATTCCAGAGTACAGCGTATGCGAGTCTCCCAATACCCTCAACCTCATCCATCACCAAACATATCTCAGTGACCCCCATGATCTGGATTCATTTGGCCAACAAGTATATGTTCCATTCCAACATGGAGATATGTTAGGCTGGGCAGATGGAAGCAAGTGTTCCAGGGCCATGCCTGGTGTAATAAAGCCATTACCTTTGCGCATTTCCAGGCAAAGATTGTAA | 723 | 0.4606 | MEAAALFLQDIAILPEMETGVLEHSLAASNPFSSSFGDEGFYSKALIKGKKLRLFGFDVNPCANDGKRSVESEEGDESLSSSNTPSPWKEKTLQGKSSTKLLKERRYACQYCRKEFANSQALGGHQNAHKKERVKKKRMQLEARRASINQYLQSFQSHPRFTEPSFSIPEYSVCESPNTLNLIHHQTYLSDPHDLDSFGQQVYVPFQHGDMLGWADGSKCSRAMPGVIKPLPLRISRQRL* | 241 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi14g1699 | 240 | FunFam | zinc finger protein 5 | 81 | 160 | - | - | |
Vvi14g1699 | 240 | MobiDBLite | consensus disorder prediction | 66 | 97 | - | - | |
Vvi14g1699 | 240 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 107 | 134 | IPR013087 | - | |
Vvi14g1699 | 240 | PANTHER | ZINC FINGER PROTEIN 5 | 48 | 178 | IPR044299 | GO:0010090 | |
Vvi14g1699 | 240 | SUPERFAMILY | beta-beta-alpha zinc fingers | 103 | 134 | IPR036236 | - | |
Vvi14g1699 | 240 | Gene3D | Classic Zinc Finger | 81 | 160 | - | - | |
Vvi14g1699 | 240 | MobiDBLite | consensus disorder prediction | 76 | 95 | - | - | |
Vvi14g1699 | 240 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 109 | 129 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi14g1699 | Vvi-Chr14 | 28162609 | 28163331 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi14g1699 | 51 | 151 | C2H2 Transcription Factor Family | AT1G68360 | 41.346 | 1.34e-15 | 72.0 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Vvi14g1699 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi14g1699 | - | - | vvi:100852925 | 483.026 |