Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1699 ATGGAGGCAGCCGCATTGTTTCTCCAAGATATAGCAATACTCCCAGAGATGGAAACAGGTGTGCTGGAGCATAGCCTTGCTGCTTCCAATCCTTTTTCTTCTAGTTTTGGAGATGAGGGTTTCTACTCTAAAGCCCTAATCAAAGGGAAGAAACTCAGATTGTTTGGCTTTGACGTGAATCCATGTGCAAATGATGGAAAGCGTTCAGTGGAGTCAGAGGAAGGAGATGAAAGTTTGAGTTCCTCTAACACACCTTCACCTTGGAAGGAGAAAACTCTCCAGGGAAAGAGTTCAACAAAGTTGCTGAAAGAGAGGAGGTACGCTTGCCAGTACTGTCGCAAAGAGTTTGCAAACTCGCAAGCGCTGGGAGGCCATCAGAATGCCCACAAAAAGGAGAGAGTGAAGAAGAAAAGAATGCAACTTGAGGCAAGACGGGCAAGCATCAACCAATATCTTCAGTCTTTCCAATCCCATCCAAGGTTTACCGAGCCCTCTTTCAGCATTCCAGAGTACAGCGTATGCGAGTCTCCCAATACCCTCAACCTCATCCATCACCAAACATATCTCAGTGACCCCCATGATCTGGATTCATTTGGCCAACAAGTATATGTTCCATTCCAACATGGAGATATGTTAGGCTGGGCAGATGGAAGCAAGTGTTCCAGGGCCATGCCTGGTGTAATAAAGCCATTACCTTTGCGCATTTCCAGGCAAAGATTGTAA 723 0.4606 MEAAALFLQDIAILPEMETGVLEHSLAASNPFSSSFGDEGFYSKALIKGKKLRLFGFDVNPCANDGKRSVESEEGDESLSSSNTPSPWKEKTLQGKSSTKLLKERRYACQYCRKEFANSQALGGHQNAHKKERVKKKRMQLEARRASINQYLQSFQSHPRFTEPSFSIPEYSVCESPNTLNLIHHQTYLSDPHDLDSFGQQVYVPFQHGDMLGWADGSKCSRAMPGVIKPLPLRISRQRL* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1699 240 FunFam zinc finger protein 5 81 160 - -
Vvi14g1699 240 MobiDBLite consensus disorder prediction 66 97 - -
Vvi14g1699 240 ProSiteProfiles Zinc finger C2H2 type domain profile. 107 134 IPR013087 -
Vvi14g1699 240 PANTHER ZINC FINGER PROTEIN 5 48 178 IPR044299 GO:0010090
Vvi14g1699 240 SUPERFAMILY beta-beta-alpha zinc fingers 103 134 IPR036236 -
Vvi14g1699 240 Gene3D Classic Zinc Finger 81 160 - -
Vvi14g1699 240 MobiDBLite consensus disorder prediction 76 95 - -
Vvi14g1699 240 ProSitePatterns Zinc finger C2H2 type domain signature. 109 129 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1699 Vvi-Chr14 28162609 28163331 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1699 51 151 C2H2 Transcription Factor Family AT1G68360 41.346 1.34e-15 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi14g1699 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1699 - - vvi:100852925 483.026