Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1686 ATGCATGGGCGGGAAGGTGAGAAGAGGCAACAGCGCCGGCACATGTGGCCTGTCCCGCCACACACGGCAGTAGCTTCCGATTCCGCCGCCCCCTATTCCTTCTGCAAAGATGGACGCACGATTAGTGTCGGTGACTGTGCACTTTTCAAGCCGCCTCAAGATTCCCCACCTTTCATTGGAATAATTCGAAGATTGACAGTAGGCAAAGAGGACAATCCAAATCCAAAGTTAGGAGTGAATTGGCTCTACCGACCTGCTGATATAAAGCTTGGAAAAGGTATTTTGCTGGAAGCTGCACCAAACGAAGTCTTTTACTCATTCCACAAGGATGAGATACCTGCTGCATCGTTACTCCATCCGTGTAAAGTCGCATTCCTTCGTAAAGGTGTTGAACTTCCTCCAGGGATATCCTCATTTGTGTGCAGAAGAGTGTATGATATTGAGAACAAGTGTTTATGGTGGCTAACTGACAAAGATTACATTAATGAACGACAAGAAGAAGTAGATCAGCTTTTAGACAAGACGCGACTAGAAATGCATGGGGTAGTGCAGTCGGGAGGCCGTTCTCCAAAACCTTTGAATGCTCCGGCATCAACACAGCCGTTAAAACCTGGTGCAGATAGTGTACAGAACAGTGCCTCCTCCTTTTCTTCTCAGGGTAAGGGCAAGAAGAGGGGGTGTGATCAGAGCTCTGATCCCGCTAAACGGGAGCGCTTATCTAAAACAGATGATGGGGATTCTGGTCAATTTAGACCAGAAAACATGTTAAAATCTGAGATTGCCAAAATAACAGATAAAGGAGGGCTTGTAGACCTTGATGGGGTTGACAGATTAGTGCAACTCATGCAACCTGACAGTTCTGAAAAGAAAATAGATTTGGCGAGCCGAATAATGCTTGTTGATGTAATAGCAGTCACAGAGAGGGTCGAGTGCCTTGTACGGTTTGTACAGCACAGGGGCTTGCCTGTATTGGATGAATGGCTCCAAGAGGCCCACAAAGGGAAGATTGGTGATGGTAGTAGCCCCAAGGAAAACGATAAATCTGTTGAGGAATTTCTCTTGGCTTCACTTCGTGCACTAGACAAGCTGCCTGTGAATCTCCATGCGCTACAGACTTGCAATGTTGGCAAGTCTGTGAATCATTTACGCAGTCATAAAAATTCTGAAATTCAGAAGAAAGCTAGGAGTTTAGTTGACACATGGAAGAGACGAGTTGAAGCTGAAATGAACATTGATGATGCAAAATCTGGGTCAAGTCGCAGTGTTTCATGGCAAACAAAGGCAGTGTCTTCTGAAGTTTCTCATGCAGGGAACAGGAAAACTGGGGGATCGTCTGAAGCTGGCATGAAGAGCTCCATTGTACAACCACCGGCATCTAGAACTCCTTCAGTTAAGCTCAGTGGTGGGGAAGCTGTTGGTAAGTTTGCCTCTGCTTCTCCGGGCTCAACTAAATCGTTGACTGGATCAGCAGGTATTAACTCAAAGGATCCAAATTCCAAAATGTTGGTTGGTGGTGGAAGCTCAGATGTGCCTCTAACTCCAATCAAGGAGGAGAAAAGCAGCAGTTCTAGTCAGTCTCAGAACAATAGTCAGTCTTGCTCAAGTGACCATGCAAAAGCTGTGGGTTCTTCGTGCAGGGAAGATGCAAGGAGCTCCACTGCGGGGTCATTGAGTGCAAATAAGATATCAAGCAGTTCTTCTCGGCATCGAAAATCAAGCAATGGTGTTCATGGCTCAGGAAGTCAAAAGGAAACTGGGTTGGGAAAATTTGGTTCCTTAAATAGGAGTTCGACATCCGAAAAGGTGTCACCAGCTGGAGCAATGCATGAAAAAGTGTCCGATGTTCCCCCTTCTGATCATTTAAATAATGGATTGGCTGGGTCTGATGAAGGTACTGGGTCACCTGCTGCTGTTCTTTGTGATGAACTGCACAGGGTGAGTGAAGATGGTGAGAGGCCAAAAGAAGTGTCAAAAACTACTGGTTCATCATCAGGGATTACACCGAAGTCAGGAAAATCATATGAGGCTTCTTTCAGCTCCATAAATGCTTTGATTGAAAGCTGTGCCAAGATATCTGAAGCTAGTGCATCTGCATCACCTGGGGATGACATTGGGATGAATCTACTTGCTAGTGTGGCTGCTGGAGAAATATCCAAGTCTGACATTGTCTCTCCATTGAGTTCTCCTGGGAGGAATTCCCCTGTACCAGAGGACTCTTGCTCTGGAGATGATGCCAAATTGACTCAGTTGGATGAAGACATTGGTCAAACCCAAAATCAACCTAATGATGAGGCGATTGTTGGTGCTGCTGCTGAGAGGGGCAATTCCATTGATTCTTCACGGTTGAAGAACGGTTTACGACATTCGTCTGCCCCTGTTGCGACTGACTTTTCTGGAGACAACAGAGCCTGTGAGGAGAAAATAGGGGAGTGCAGTGCACAGTTGAATTCTTCGAGTATGGAGTTGCAACAAAATACAGATAAGGCTGAAGGTGTTAACCAATTTCATGAACAAAGAAGATCAGGTGCTCACCAGGCAAGAAGCAACTGTATTTCTGATTCTAAATTGAATATAAGGAGTCCCTTGCTCGATGAAGATAAGAAGGCTGATTGTGTGGATGAAAGAACTGCAGAGAACAGTATGGCAGCAGTAACAGAGGCAACTTCTAAAAGTGTAAAATTCAAGAAGGAAAGTAATGAAGAAATACCTTGCTTATCAGAAAGGGCAGGGGAGGACATGGATTTTGTGGATAAAGATTCAGTTAGTGTCATCTTGTCTGAGCAAAAGCCACCTCTTCTTGGAAAGGTTTGCTCAGAGTCTATAGCAGGAAAAAGTGAGGATGCTGTGTTATCTTCTGCTTCTGGTAATGTTTTGGGTGTAGAGTCTAAAACTGAGAAGGCTGACAACTTAAAGACTGAGTGTCATGTTGAGCAGAGTGGGAAACAGAGAACAGACATGAGTTCATTTGTCTCTGAGCAGAATGGTGAATGTGCTGAGGAGAAATCAGAAAGAAAACAGGTTGTTGGTCATCGTTCTGGTGGATCACTTCCCCATGAGGAGTCACCCGCAACTGCCATTCATGAACCTGAAAGGGGAGTGGAGTCCAGTGAGTGTAAAAAAGAGGGAGTTGAAGTGGATGGGACAAAAGAGCGACAGACATCCACTGTGAATACATCATTTTCTGCTGCAGGTTCAGATATGGCTGTAAAGTTAGACTTTGATTTGAATGAGGGGTTCCCTTCTGATGATGGGAGTCAAGGAGAGCTTGTTAAGTCATCGGTTCCAGGATATTCATCTGCTGTTCATGTGCCCTGCCCTGTTCCTGTGCCTATTTCTGCTGTGTCAGGGAGCTTCCCTGCTTCTATTACTGTGACTGCTGCAGCAAAAGGGTCATTTGTTCCTCCTGAAAACCTATTGAGAACTAAGGGTGAGCTTGGATGGAAAGGATCAGCTGCTACCAGTGCTTTCCGGCCTGCTGAACCTAGAAAGGTTCTAGAGATGCCACTCAATACAACTGATGTGCCTCTCATAGATAATCCTGCTAGCAAACAAGGTCGCCACCCTTTGGACATCGACCTGAATGTGCCAGACCAGAGAGTTTATGAGGATGCTGCTTCTGTTATTGCTGCACCTGTGCCTCGTGACGGTAGCGCTGGAGGACTGGATCTTGATTTAAACAGAGTTGATGAAAGTCCTGATATTGGGCTGTTTTCTGTGAGCAATGGTTGTAGATCAGATGCTCCACCATTGCCTAATAGGTCATCATTATCTGGTGGGTTTTCCAATGGTGAAGTGAATGCATCTAGGGACTTTGATTTGAACAATGGACCAAGTCTTGATGATGTGGGCACCGAAACAGCACCTCGTACCCAGCATGCTAAAAACAGTGTGCCCTTCCTGTCGTCTGTTCCTGGCATCAGAATGAACAGTACAGAATTAGGAAACTTTTCATCTTGGTTCCCTCAGGGAAGCTCCTATTCTGCCATCACAATCCCATCAATGTTGCCAGGTAGAGGAGAGCAGAGTTATCCAATTATTCCTTCTGGTGCTTCAGCTGCTGCAGCTGCTGCTGGGTCACAAAGGATTATAGGTCCTACTGGTGGAACTCCTTTTGGTCCTGAAATTTATAGGGGTCCAGTTCTATCTTCTTCTCCTGCTGTGCCCTTTCCACCTGCCCCCCCATTTCAATATCCTGGGTTCCCCTTTGAGACCAATTTCCCTCTCTCATCAAATTCCTTTTCAGGTTGTTCAACAGCATATGTAGATTCCACATCTGGAGGATCACTTTGCTTTCCTGCCATTCCCTCACAGCTGGTTGGACCTGCTGGTGTTGCCCCCCCACTGTACCCTCGGCCCTATGTAATGAGCCTTCCAGGCAGTGCAAGTAATGTTGGTGCTGAAAATAGGAAATGGGGAAGTCAGGGTCTAGATCTTAATGCAGGTCCTGGAGGTACAGATACAGAACGGAGGGATGAGAGGCTGCCTCCAGCTTTGAGGCAGCTTCCTGTTGCTGGTTCACAAGCCCTGGCGGAGGAGCAGCTAAAGATGTATCATCAGGTGGCAGGAGGGGTATTGAAGAGAAAAGAGCCTGATGGTGGTTGGGATGCAGCAGATAGATTTGGCTATAAGCAACCCTCATGGCAGTAG 4647 0.4622 MHGREGEKRQQRRHMWPVPPHTAVASDSAAPYSFCKDGRTISVGDCALFKPPQDSPPFIGIIRRLTVGKEDNPNPKLGVNWLYRPADIKLGKGILLEAAPNEVFYSFHKDEIPAASLLHPCKVAFLRKGVELPPGISSFVCRRVYDIENKCLWWLTDKDYINERQEEVDQLLDKTRLEMHGVVQSGGRSPKPLNAPASTQPLKPGADSVQNSASSFSSQGKGKKRGCDQSSDPAKRERLSKTDDGDSGQFRPENMLKSEIAKITDKGGLVDLDGVDRLVQLMQPDSSEKKIDLASRIMLVDVIAVTERVECLVRFVQHRGLPVLDEWLQEAHKGKIGDGSSPKENDKSVEEFLLASLRALDKLPVNLHALQTCNVGKSVNHLRSHKNSEIQKKARSLVDTWKRRVEAEMNIDDAKSGSSRSVSWQTKAVSSEVSHAGNRKTGGSSEAGMKSSIVQPPASRTPSVKLSGGEAVGKFASASPGSTKSLTGSAGINSKDPNSKMLVGGGSSDVPLTPIKEEKSSSSSQSQNNSQSCSSDHAKAVGSSCREDARSSTAGSLSANKISSSSSRHRKSSNGVHGSGSQKETGLGKFGSLNRSSTSEKVSPAGAMHEKVSDVPPSDHLNNGLAGSDEGTGSPAAVLCDELHRVSEDGERPKEVSKTTGSSSGITPKSGKSYEASFSSINALIESCAKISEASASASPGDDIGMNLLASVAAGEISKSDIVSPLSSPGRNSPVPEDSCSGDDAKLTQLDEDIGQTQNQPNDEAIVGAAAERGNSIDSSRLKNGLRHSSAPVATDFSGDNRACEEKIGECSAQLNSSSMELQQNTDKAEGVNQFHEQRRSGAHQARSNCISDSKLNIRSPLLDEDKKADCVDERTAENSMAAVTEATSKSVKFKKESNEEIPCLSERAGEDMDFVDKDSVSVILSEQKPPLLGKVCSESIAGKSEDAVLSSASGNVLGVESKTEKADNLKTECHVEQSGKQRTDMSSFVSEQNGECAEEKSERKQVVGHRSGGSLPHEESPATAIHEPERGVESSECKKEGVEVDGTKERQTSTVNTSFSAAGSDMAVKLDFDLNEGFPSDDGSQGELVKSSVPGYSSAVHVPCPVPVPISAVSGSFPASITVTAAAKGSFVPPENLLRTKGELGWKGSAATSAFRPAEPRKVLEMPLNTTDVPLIDNPASKQGRHPLDIDLNVPDQRVYEDAASVIAAPVPRDGSAGGLDLDLNRVDESPDIGLFSVSNGCRSDAPPLPNRSSLSGGFSNGEVNASRDFDLNNGPSLDDVGTETAPRTQHAKNSVPFLSSVPGIRMNSTELGNFSSWFPQGSSYSAITIPSMLPGRGEQSYPIIPSGASAAAAAAGSQRIIGPTGGTPFGPEIYRGPVLSSSPAVPFPPAPPFQYPGFPFETNFPLSSNSFSGCSTAYVDSTSGGSLCFPAIPSQLVGPAGVAPPLYPRPYVMSLPGSASNVGAENRKWGSQGLDLNAGPGGTDTERRDERLPPALRQLPVAGSQALAEEQLKMYHQVAGGVLKRKEPDGGWDAADRFGYKQPSWQ* 1549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1686 1548 MobiDBLite consensus disorder prediction 478 496 - -
Vvi14g1686 1548 MobiDBLite consensus disorder prediction 514 539 - -
Vvi14g1686 1548 Pfam BAH domain 40 150 IPR001025 GO:0003682
Vvi14g1686 1548 MobiDBLite consensus disorder prediction 816 848 - -
Vvi14g1686 1548 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 619 1548 - -
Vvi14g1686 1548 MobiDBLite consensus disorder prediction 996 1056 - -
Vvi14g1686 1548 MobiDBLite consensus disorder prediction 1023 1048 - -
Vvi14g1686 1548 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 273 410 IPR035441 -
Vvi14g1686 1548 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 310 419 IPR035441 -
Vvi14g1686 1548 Pfam TFIIS helical bundle-like domain 357 405 IPR017923 -
Vvi14g1686 1548 MobiDBLite consensus disorder prediction 414 462 - -
Vvi14g1686 1548 ProSiteProfiles TFIIS N-terminal domain profile. 322 408 IPR017923 -
Vvi14g1686 1548 MobiDBLite consensus disorder prediction 182 254 - -
Vvi14g1686 1548 MobiDBLite consensus disorder prediction 721 745 - -
Vvi14g1686 1548 MobiDBLite consensus disorder prediction 1245 1293 - -
Vvi14g1686 1548 MobiDBLite consensus disorder prediction 546 603 - -
Vvi14g1686 1548 SMART TFS2_5 328 407 IPR003617 GO:0005634
Vvi14g1686 1548 MobiDBLite consensus disorder prediction 721 735 - -
Vvi14g1686 1548 MobiDBLite consensus disorder prediction 1526 1548 - -
Vvi14g1686 1548 MobiDBLite consensus disorder prediction 1240 1293 - -
Vvi14g1686 1548 MobiDBLite consensus disorder prediction 816 831 - -
Vvi14g1686 1548 SMART BAH_4 39 156 IPR001025 GO:0003682
Vvi14g1686 1548 ProSiteProfiles BAH domain profile. 39 156 IPR001025 GO:0003682
Vvi14g1686 1548 MobiDBLite consensus disorder prediction 1 21 - -
Vvi14g1686 1548 MobiDBLite consensus disorder prediction 191 224 - -
Vvi14g1686 1548 MobiDBLite consensus disorder prediction 642 656 - -
Vvi14g1686 1548 MobiDBLite consensus disorder prediction 657 673 - -
Vvi14g1686 1548 CDD TFIIS_I 330 406 - -
Vvi14g1686 1548 Gene3D - 21 262 IPR043151 -
Vvi14g1686 1548 MobiDBLite consensus disorder prediction 412 673 - -
Vvi14g1686 1548 MobiDBLite consensus disorder prediction 225 250 - -
Vvi14g1686 1548 MobiDBLite consensus disorder prediction 1464 1495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1686 Vvi-Chr14 28050279 28057318 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vvi14g1686 BAH 3.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1686 - - vvi:100252575 2563.87