Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1678 ATGGGAGATGGGCACTGTCTGAGGGACATGGTGCCATTTCTGGGCATGGTCACAGTGGAGGCCACCAATGTAGTCTTGAATGTCTTGTTTAAATCAGCCACATCTAGAGGGATGAGTGTCTATGTCTTCATTGTCTACTCTTATGCTGTTGCCACTCTCATTCTCTTCCCTTTGCTCTTCATCTTCAACGGAAAGAGATTGCTTCTTCCCCCTTTCAAGTTCTCTCTCCTTTGTAAAATATGCAGCCTTGGATTCATTGGGTTTTTAGCTGAAATAGTCGCTTATAAGGGTATAGACTACAGTTCTCCAACTCTTGCTTCAGTTATCGGCAACCTCACACCAGCTCTTACTTTCATGCTTGCCATCTTTTTCAGGATGGAAAAGCTAGCTTTGAGAAGCTTGAGTAGCTGGGCTAAAATCACAGGGACCATAGCATCAATATCAGGTGCATTGATAGTAGTTCTTTACAAGGGCCTTCAACTCACTTCAACTTCTTCTCCGTTGCAATTCATTTCACTTCATCAGCCTCTAAACTCACAGCAAATGAAATGGGTCATTGGTGGCCTTTTACTTGTTGCTGAAGACCTTTTGGTTTCAATCTGGTACATTGTTCAGGCCCAAGTGATGGAGGTGTACCCAGAAGAGCTAGTTGTTGTCTTCTTGAGCAACCTATGCTTGACCATCATATCTGCGCCAGTATGCCTAATTGCAGAAAAAAACTTGAGTGTTTGGAGAGTTGAACTTGATATAGCATTGGCTGCTATTGTTTTCTCTGCATTCTGGGGGTCTGCCTTTGGAATGGTTGTACCCACATGGGTTGTGCGCTTGAAGGGCCCTGTCTATGTTGCAATGTTCAATCCATTGTCCATTGTCATTGCAACCGCCATGGGGGTTATGTTCCTTGGCGATACTTTATATCTTGGAAGCATCATAGGAGCGATAGTAATATCCATTGGGTTTTATATTGTAACCTGGGGAAAGGCAAAAGAAGAGACAATTGAGGACTTTGGAGTTGGAAGCTTGGAATCCTTGTCTAACCCAAAGATCCCTCTGTTGCTAAGCTGTCAAAGTGAAGTATAG 1080 0.4352 MGDGHCLRDMVPFLGMVTVEATNVVLNVLFKSATSRGMSVYVFIVYSYAVATLILFPLLFIFNGKRLLLPPFKFSLLCKICSLGFIGFLAEIVAYKGIDYSSPTLASVIGNLTPALTFMLAIFFRMEKLALRSLSSWAKITGTIASISGALIVVLYKGLQLTSTSSPLQFISLHQPLNSQQMKWVIGGLLLVAEDLLVSIWYIVQAQVMEVYPEELVVVFLSNLCLTIISAPVCLIAEKNLSVWRVELDIALAAIVFSAFWGSAFGMVVPTWVVRLKGPVYVAMFNPLSIVIATAMGVMFLGDTLYLGSIIGAIVISIGFYIVTWGKAKEETIEDFGVGSLESLSNPKIPLLLSCQSEV* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1678 359 SUPERFAMILY Multidrug resistance efflux transporter EmrE 241 328 - -
Vvi14g1678 359 PANTHER WAT1-RELATED PROTEIN 11 334 IPR030184 GO:0016020|GO:0022857
Vvi14g1678 359 Pfam EamA-like transporter family 188 324 IPR000620 GO:0016020
Vvi14g1678 359 Pfam EamA-like transporter family 28 154 IPR000620 GO:0016020
Vvi14g1678 359 SUPERFAMILY Multidrug resistance efflux transporter EmrE 49 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1678 Vvi-Chr14 27990886 27993645 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1678 8 334 Nodulin-like Gene Family AT5G40230 56.667 1.80e-124 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1678 - - vvi:100264674 693.73