Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1677 ATGGGAGTGCACGGTCTCTGGGAACTTTTGGCCCCTGTCGGTCGCCGTGTGTCTGTCGAGACTCTTGCCGGAAAACGACTCGCCATAGATGCGAGTATATGGATGATACAGTTCATGAAGGCAATGCGAGACGAGAAAGGAGAGATGGTGAGGAACGGTCACCTGTTAGGGTTCTTCCGACGCATATGCAAGCTCCTCTTCCTACGCACTAAGCCCGTTTTCGTTTTCGACGGCGGCACCCCTGCCCTCAAGCGCCGCACCGTTGTCGCTCGTCGCCGGCAGCGAGAAAATGCTCAGGCCAAGATTCGGAAAACTGCCGAGAAATTGCTCCTCAATCACCTTAAGGCAATGAGGTTAAAAGAATTGGCTAAGGATTTGGAGAATCAGCGGCTGAACAACAATGATAAGGGGAAAAAGGTTTTATCATATCAAACGGAAACGGCTGGAGAGGTTTCTGAAGGAAATAGTTCAGTATCCGGGACTTACAATCAGGAAAAGCTAGATGAAATGTTGGCAGCATCCCTTGCGGCAGAGGAAGATGGGAATTTTGTAGGAGATGCAGGGATTTCTAATGAAGAAGATGATGATGATGATGAAGATGAAGAGATGATGCTTCCAATTATGAATGGAAAAGTCGATCCAGCTGTATTAGCTGCATTGCCTCCATCAATGCAGCTTGATCTTCTTGTGCAGATGAGAGAGAAATTGATGGCAGAAAACAGACAAAAATATCAAAAAGTGAAAAAGGCCCCCGCAGAATTTTCAGAGTTACAAATACAGGCTTATCTTAAAACCGTTGCTTTCCGTCGGGAGATAGATGAAGTGCAGAAATCTGCTGCTGGGAGGGGGGTAGGTGGTGTGCAGACTTCACGGATAGCCTCTGAAGCCAATAGAGAATATATTTTCTCCTCATCATTTACTGGTGATAAAGAAGCACTTACAAATGGTGGAGTAGAGAAAAATGGAGATAAGCAATATCAGATACCAACAGAGTGTCCTCCAGATTCCCCAAATAATGTTGCATCTACCAGTAAGTCCAATACTGCCGCAGAATCAGTTGCAGGTGAACCTGCAAGTGTTTTTAATGATGATGTTGAGACATACCTGGATGAGCGGGGGCGTGTCCGAGTTAGTAGGGTAAGAGCTATGGGAATTCGTATGACCCGAGATCTACAAAGGAATTTGGATTTGATGAAAGAGATTGAGCAGGATAGAACTAATGAGGATAATAACGGAATTGTTACATTAAACAAAACAAATGAGCAGTCTATCCCTGACAATGGGGCTTCTATAGAGATATCCTTCGAAGATGATGGTGAGCACAACTGTTTAAATGGTGATGACGAATTATTTGCTAGTTTGGTAGCAGGAAATCCAGTGATAATTTCTTCTTCTGATGCTGCTCTCTCAAACAGACGACCAGCTGATTCTGCTTCAGATTCTGACTGGGAGGAGGGAATCATTGAAGAGAAAGGTGGTAGCTGTATTGACAATGTTGGAGTGGAAATTAAACCATCTGTTATGGAAGAAAGAGTTAGTGATGATAGTGAAGTGGAATGGGAGGAAGGACCTTGTGATGTTTCAAAAAATGTGTCAGCATGCCCATCTAAGTTTGGAAATCCTGCTTCCAAAGGAAGATTGGAAGAAGAAACTGATCTCCAGGAAGCAATAAGGAGAAGTCTTGAAGATTTAGGTGGTGAGAAAGCTGTTGGTGAATCATTTAAAGATTCGGATATTAAGGAATATGATGAAAAGGTTCATGAAGTTAAAGATGATGCATTTCATAAAAAAAATGATAAGGCTGAACAAGATTTTCCATTGGAAAATTTACCAGAGCAAAATGGATCATTTTGTAAAATTGTGGATGTAGTTGAGAAACTTGATAGTGTGGATGGAATGAACACCTCACAGAGCATTGATGCATCAGGGAGACAGTTGACATCATTGCTGGAAGACAATCCTCATAAGATGGAAGTACTGAATAATGAACTGTGTGAAGAATACCAGAAAGATGTTGGTGAAAGTGGAAATGTGGGAAGAGAAACAAATGAGGTCTATATGATTAGGGAGCAGCTCTCTCATGCCTCAAAGAAGAGTGTTGATACATCTACTTTGGCTAACAGTTGTTCGGGAGATGGTTCACATATTTCTGATGCAATGTTGGGTAACATGCCTGACGCCACTCCTGCTGATTCAAGCAAGTATGATTCTGAAGCTGCACCAACATGGCATTCAAATGAGACAACTGACCCTGCCATTCCTCCAGGAGAAACTTGTATAAAAGGAAAAACTGCTGTTGAGCAAAAATTGGCTGAAGGAAATAATCATGTTAATTTTTTCATGGAAAAAGAGCGGAACATGGGTAATTCTGTAACTGAGGACAAAAAAAATGTTCAGTTTGGAGTTACTGAGGATGTTTTGGAGGAAATGATGATCCTTGATCAGGAATGCTTAAATTTGGGAGATGAACAGAGGAAGCTTGAAAGAAATGCTGATTGTGTCAGCAGTGAGATGTTTGCAGAGTGCCAGGAACTTCTCCAAATGTTTGGCTTACCATATATTATTGCACCTATGGAAGCTGAAGCTCAATGTGCTTATATGGAACTTGCAAACCTTGTTGATGGAGTTGTAACAGATGATTCAGATGTATTCTTGTTTGGAGCACGAAGTGTTTACAAGAATATATTTGACGAACGCAAATATGTTGAGACCTATTTTATGAAGGACATTGAGACTGAGCTTGGATTAAATAGAGAAAAAGTAATTCGCATGGCACTCCTTCTTGGGAGTGATTATACTGAGGGTGTTAGTGGAATTGGCATTGTTAATGCTATTGAAGTTTTAAATTCTTTTCCTGAGGAGGACGGTCTTCATAAGTTCCGGGAGTGGGTTGAATCACCAGATCCAAACATCCTAGGAAAGGTTAATGTTGAAACTGGATCCAGTTCAAGGAAACGAGGATCCAAGGTTGGAAGTGGCGACCAGAGTCACTCAAAAAACAATATGGATGCATTTGATGAAAATGTTTCCCAAAACGAGCACAATGAGTCTGTTGATGACATTCAATCTGGAAAGCAGATCTTCATGGATAAGCACAGAAATGTGAGCAAGAACTGGCACATTCCTTCTTCTTTTCCAAGTGAAACAGTTATCTCTGCATATGCCTCTCCCCAAGTGGACCAGTCAACAGAGCCTTTCTCGTGGGGAAAACCAGATCTTTTTGTTCTTCGCAAATTGTGTTTGGAAAAGTTTGGTTGGGGTAACCAGAAGGCTGATGAGTTGCTACTACCTGTTTTGAAAGAGTACAACAAACATGAGACTCAATTGCGGTTGGAAGCATTTTACACTTTCAATGAGAGATTTGCCAAAATTCGTAGTAAGAGAATCAAAAAGGCTGTTAAAGGAATTACCGGGAGTCAAACCTCAGAGTTGTTGGATGATGCTGTGCAAGAAGGTTCTAAACGTGGAAAGAGAAGCAAAGAGAGTCCTAGTAAACTTGACAACAAACAAGAAATTCCTATAAATGAAATAGGGAGTACTGCTGCTAGAAATGGGAGCAATGCTACAGCAAAAACAACTCCAAAGCAGTCAAGAAGAAGAAGGATCCGTAAGCCTGTTCCATCTGATGGAGAGAGTGCAGAACCTCCTGTGCAGGCAGGACAGAAGCAATGCAACGATACAGGATCAAGCAAGAATGGAAGAGGTAAAGGAAGAAAGAAAGGCCGGGGAGTCAGAAGGGGAAGAGGAAGAAGTAGGATACAAGAAAATCCTGGCTCTGAAATTAGTGGAACCAGCTCCAGTGACTGTAACAGTGGCAATGAGGAGGAAGTTCCAGCTCAAAAGTTGGACGGGTCAAATGAAGTGCGAAGGTCAAAACGTCCTCGGAAGGCTGTGAATTATGCTAATGATGACTTAGAAATTGATGACGAGGGCAAGTCATTAGACCAAGGCAACCAAAAGTGCACCAATGAGGAGGCAGTGGAGCTTGAGCCATCTAGAGATCAGATTATATGTGGAGATGCTGCTGCTGATTTCAGTGGAAAGAACCAACAAAAAGCTGAAGATTCTTCACCTGGAGAAGACTTGTGTGGAGACTACCCAGAAACAGAAGGTGTCATGTGCATGGATGAAAATGAAATAGGTCAGTTAGATTCAAGAGATGATGATCCCACTTTTGCGGATGAATTTTCTGAAGATTACCTTAAAATGGGAGGTGGATTTTGTGTGGAAGAAGATGAGAAAGATAAGGACCACAATGCTCGCACATATGACCCAGCTAAAGCAGACACCATCTATGAAAATCCTGATCCTGAATCTGAACTCGCTATTCATCCAGCTGAATCAGTCTCAAGCCTGCAAAATACTGCAGGGGGATTTCAATCTGAACCAACATGTCAACCTGATACTGAACTGAATCTGGACTGTCCAAATGCAACAATTGGGCTGTCTATGCCGGAGAACACGGGAGACGACACTGGAACAAACACTGTAAAAGCTCTTCGTGCTATGCCTTTCTTAAGAAAAAAGCGAAGGTTGAGTTGA 4542 0.4225 MGVHGLWELLAPVGRRVSVETLAGKRLAIDASIWMIQFMKAMRDEKGEMVRNGHLLGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVVARRRQRENAQAKIRKTAEKLLLNHLKAMRLKELAKDLENQRLNNNDKGKKVLSYQTETAGEVSEGNSSVSGTYNQEKLDEMLAASLAAEEDGNFVGDAGISNEEDDDDDEDEEMMLPIMNGKVDPAVLAALPPSMQLDLLVQMREKLMAENRQKYQKVKKAPAEFSELQIQAYLKTVAFRREIDEVQKSAAGRGVGGVQTSRIASEANREYIFSSSFTGDKEALTNGGVEKNGDKQYQIPTECPPDSPNNVASTSKSNTAAESVAGEPASVFNDDVETYLDERGRVRVSRVRAMGIRMTRDLQRNLDLMKEIEQDRTNEDNNGIVTLNKTNEQSIPDNGASIEISFEDDGEHNCLNGDDELFASLVAGNPVIISSSDAALSNRRPADSASDSDWEEGIIEEKGGSCIDNVGVEIKPSVMEERVSDDSEVEWEEGPCDVSKNVSACPSKFGNPASKGRLEEETDLQEAIRRSLEDLGGEKAVGESFKDSDIKEYDEKVHEVKDDAFHKKNDKAEQDFPLENLPEQNGSFCKIVDVVEKLDSVDGMNTSQSIDASGRQLTSLLEDNPHKMEVLNNELCEEYQKDVGESGNVGRETNEVYMIREQLSHASKKSVDTSTLANSCSGDGSHISDAMLGNMPDATPADSSKYDSEAAPTWHSNETTDPAIPPGETCIKGKTAVEQKLAEGNNHVNFFMEKERNMGNSVTEDKKNVQFGVTEDVLEEMMILDQECLNLGDEQRKLERNADCVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDERKYVETYFMKDIETELGLNREKVIRMALLLGSDYTEGVSGIGIVNAIEVLNSFPEEDGLHKFREWVESPDPNILGKVNVETGSSSRKRGSKVGSGDQSHSKNNMDAFDENVSQNEHNESVDDIQSGKQIFMDKHRNVSKNWHIPSSFPSETVISAYASPQVDQSTEPFSWGKPDLFVLRKLCLEKFGWGNQKADELLLPVLKEYNKHETQLRLEAFYTFNERFAKIRSKRIKKAVKGITGSQTSELLDDAVQEGSKRGKRSKESPSKLDNKQEIPINEIGSTAARNGSNATAKTTPKQSRRRRIRKPVPSDGESAEPPVQAGQKQCNDTGSSKNGRGKGRKKGRGVRRGRGRSRIQENPGSEISGTSSSDCNSGNEEEVPAQKLDGSNEVRRSKRPRKAVNYANDDLEIDDEGKSLDQGNQKCTNEEAVELEPSRDQIICGDAAADFSGKNQQKAEDSSPGEDLCGDYPETEGVMCMDENEIGQLDSRDDDPTFADEFSEDYLKMGGGFCVEEDEKDKDHNARTYDPAKADTIYENPDPESELAIHPAESVSSLQNTAGGFQSEPTCQPDTELNLDCPNATIGLSMPENTGDDTGTNTVKALRAMPFLRKKRRLS* 1514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1677 1513 Gene3D - 781 915 - -
Vvi14g1677 1513 Gene3D - 1 144 - -
Vvi14g1677 1513 MobiDBLite consensus disorder prediction 1144 1328 - -
Vvi14g1677 1513 MobiDBLite consensus disorder prediction 972 1002 - -
Vvi14g1677 1513 CDD PIN_XPG_RAD2 834 914 - -
Vvi14g1677 1513 MobiDBLite consensus disorder prediction 1414 1438 - -
Vvi14g1677 1513 MobiDBLite consensus disorder prediction 1255 1274 - -
Vvi14g1677 1513 CDD H3TH_XPG 919 1060 - -
Vvi14g1677 1513 MobiDBLite consensus disorder prediction 738 752 - -
Vvi14g1677 1513 SMART xpgineu 847 916 IPR006086 GO:0004518
Vvi14g1677 1513 PRINTS Xeroderma pigmentosum group G protein signature 96 118 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Vvi14g1677 1513 PRINTS Xeroderma pigmentosum group G protein signature 1097 1117 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Vvi14g1677 1513 PRINTS Xeroderma pigmentosum group G protein signature 54 77 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Vvi14g1677 1513 PRINTS Xeroderma pigmentosum group G protein signature 2 19 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Vvi14g1677 1513 MobiDBLite consensus disorder prediction 1148 1167 - -
Vvi14g1677 1513 Pfam XPG I-region 850 931 IPR006086 GO:0004518
Vvi14g1677 1513 MobiDBLite consensus disorder prediction 1342 1368 - -
Vvi14g1677 1513 Pfam XPG N-terminal domain 1 97 IPR006085 GO:0004518
Vvi14g1677 1513 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 916 1123 IPR036279 -
Vvi14g1677 1513 MobiDBLite consensus disorder prediction 716 755 - -
Vvi14g1677 1513 SMART HhH_4 918 951 IPR008918 GO:0003677|GO:0003824
Vvi14g1677 1513 ProSitePatterns XPG protein signature 2. 850 864 IPR019974 GO:0016788
Vvi14g1677 1513 Gene3D - 916 975 - -
Vvi14g1677 1513 CDD PIN_XPG_RAD2 2 92 - -
Vvi14g1677 1513 FunFam DNA repair protein UVH3 916 973 - -
Vvi14g1677 1513 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 867 887 IPR006084 -
Vvi14g1677 1513 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 846 863 IPR006084 -
Vvi14g1677 1513 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 921 936 IPR006084 -
Vvi14g1677 1513 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Vvi14g1677 1513 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 72 91 IPR006084 -
Vvi14g1677 1513 FunFam DNA repair protein UVH3 1 148 - -
Vvi14g1677 1513 MobiDBLite consensus disorder prediction 1173 1193 - -
Vvi14g1677 1513 MobiDBLite consensus disorder prediction 975 1002 - -
Vvi14g1677 1513 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 1360 - -
Vvi14g1677 1513 MobiDBLite consensus disorder prediction 312 355 - -
Vvi14g1677 1513 MobiDBLite consensus disorder prediction 1280 1315 - -
Vvi14g1677 1513 Coils Coil 116 139 - -
Vvi14g1677 1513 MobiDBLite consensus disorder prediction 331 353 - -
Vvi14g1677 1513 FunFam DNA repair protein UVH3 795 915 - -
Vvi14g1677 1513 ProSitePatterns XPG protein signature 1. 70 84 IPR019974 GO:0016788
Vvi14g1677 1513 SMART xpgn3 1 98 IPR006085 GO:0004518
Vvi14g1677 1513 SUPERFAMILY PIN domain-like 2 931 IPR029060 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1677 Vvi-Chr14 27978878 27988976 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1677 841 948 Core DNA Replication Machinery Family AT5G26680 34.234 2.72e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1677 K10846 - vvi:100245663 2961.4