Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1675 ATGTCAGAAAGAGAGCATAGATGGTTTTTTGGGCATACCCATTTGAAGATGTCTTGGATTCAGCATCAAATCAAGCAGAAAGATGGATATCTGACCTACCCACCTCCTCTGACTCCATCATCTTCATCTCCATATACTGCTGCTTTTCATAAAGGATCAACAGCACCTTCATCTTCATCATCCTCTGGTACTAGAATAAGTCCAGCTGTTCTTTTCATTATAGTGATTGTAGCTGTTCTGTTCTTCATCTCTGGCCTTCTCCACTTGCTTGTTAGATTTCTCATAAGGCATCCTTCTTCTTCCACATCCTCACAATCTAATAGATACCCTGAAATTTCTGAATCTGATGCTCTTCAAAGGCAGCTGCAGCAACTCTTTCATCTTCACGACTCTGGTCTGGATCAAGCCTTTATAGACGCCCTCCCAGTGTTCTTGTACAAAGAGATAGTGGGTCTGAAAGAACCATTTGACTGTGCTGTTTGTCTTTGTGAATTTTCTGAGAAGGACAAGCTGAGATTGCTTCCTGTGTGCAGCCATGCATTCCATATCAATTGTATAGATACTTGGCTCCTATCAAATTCAACATGCCCTCTCTGTAGAGGGACCCTCTTTGCTCCTGGCTTCTCAATGGAAAACCCAATTTTTGATTTCGATGATTTGAGGGAAGAAGATGGTTTTCCTGGTCATGGAGAAAATGGGTTCGCCTCTGGTCCAAAGACAGTAGAAATTGAAGAAGTTGTTGGAGAAAAGGGGGTTTTTCCTGTGAGACTTGGTAAATTCAGAAAGGTGGCTGATGGATCAGGGGAAACAGCAGGAGGAGAGACCAGCAGCAGTAATTTAGATGCAAGAAGATGCTACTCCATGGGTTCATTTCAATATGTTGTTGGTGATTCAATTTTGCGGGTGGCTCTGAACCATGAACAACAACATCCAGATGGGAAGATTGTGAAAGGGATAGAAAATAATGCAAATCCTTCAATTAATGAGGAAACAGAAGGGACAAGGAATAGTTTTGTGACTAAAGGTGACAGCTATTCTGTTTCCAAAATCTGGCTTTGGTCGAAGAAGGGTAAATTTCCAAGCTCCTCAGACAATACCCAGACCGGTATGCCTTCTCTTAATGTGGACCTGCCATGGATGGGGAGAAAACAAGAGATGTGA 1161 0.4238 MSEREHRWFFGHTHLKMSWIQHQIKQKDGYLTYPPPLTPSSSSPYTAAFHKGSTAPSSSSSSGTRISPAVLFIIVIVAVLFFISGLLHLLVRFLIRHPSSSTSSQSNRYPEISESDALQRQLQQLFHLHDSGLDQAFIDALPVFLYKEIVGLKEPFDCAVCLCEFSEKDKLRLLPVCSHAFHINCIDTWLLSNSTCPLCRGTLFAPGFSMENPIFDFDDLREEDGFPGHGENGFASGPKTVEIEEVVGEKGVFPVRLGKFRKVADGSGETAGGETSSSNLDARRCYSMGSFQYVVGDSILRVALNHEQQHPDGKIVKGIENNANPSINEETEGTRNSFVTKGDSYSVSKIWLWSKKGKFPSSSDNTQTGMPSLNVDLPWMGRKQEM* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1675 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 205 IPR013083 -
Vvi14g1675 386 SUPERFAMILY RING/U-box 137 206 - -
Vvi14g1675 386 ProSiteProfiles Zinc finger RING-type profile. 158 200 IPR001841 -
Vvi14g1675 386 CDD RING-H2_EL5-like 157 200 - -
Vvi14g1675 386 SMART ring_2 158 199 IPR001841 -
Vvi14g1675 386 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 61 351 - -
Vvi14g1675 386 Pfam Ring finger domain 157 200 IPR001841 -
Vvi14g1675 386 MobiDBLite consensus disorder prediction 44 63 - -
Vvi14g1675 386 FunFam RING-H2 finger protein ATL46 120 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1675 Vvi-Chr14 27970454 27971614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1675 57 358 C3H Transcription Factor Family AT2G18650 43.027 1.11e-60 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1675 - - jre:108997140 534.643