Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1670 ATGAATACAGCAATTCTCACGCCGGCCTCCAAGTTCCGCCCCTTCCGGCGACGACCCTCCTACGCGCCCATCACCTCCGACCTCAACCCCTACCACATTCTCTGGCGCTACCAAATTCTCGAGCCCGACGGCGACATCGTCACTTATTGGAACCACGTCTTCCTCGTCACCTCTCTCATTTCCCTTTTCCTCGACCCTCTCTACTTCTTCCTCCCCTCCGTCGGCGGTCCTGCCTGCCTCACCAGTGACACCAGCCTCGGCATTGTTGTTACCTTCTTCCGTACTGTTTCCGATCTCTTTTACTTGCTGCATATGGTGATGAAGTTTCGGACTGCTTTCGTGGCTCCCAGTTCGAGAGGCCTTGGTCGCGGTGAGCTGGTTATGGATGCTCACACGATCGCTATGCGTTACTTGAAGTCTGATTTTATTATTGATTTAGCTGCCACTCTACCGCTTCCTCAGATTGTCATCTGGTTGGTAATACCTGCAACAAAAAAAGACAGAGCAGATCAGACCAACAACACTCTTGCTCTCATTGTACTCATTCAATATGTTCCTAGACTGTTCCTTATTTTCCCTTTGAATCGGCGGATCATAAAAACTACAGGAGTTGTTGCTAAGACTGCTTGGGCAGGAGCTGCTTACAATCTCCTTCTTTACATGCTAGCCAGTCATGTATTAGGAGCTTCTTGGTATCTATTGTCCATGGGCCGACAGCACGCCTGCTGGAAAGCAGAGTGTGCAAAAGAAAGTGCAGCAGGAATTTCATTTTGTCTCCCTAGTTTTCTGGACTGTAAAAGTTTGGAACTAGAAGAACGGCAGTATTGGATGAATGCTACTCGAGTAGTTGCTAATTGTGATGCTAGAGGGCATGATACAGAATTTAAGTTTGGAATGTTTGCAGATGCTTTTACTAATGATGTTGCTTCATCAAAATTTATTGAGAAATACTTGTATTGCCTCTGGTGGGGATTAAAAAATTTAAGTTCATATGGACAGACTTTGGAAACAAGCATTTATATTGGCGAGACAACATTTTGCATTGTTATATGCATTGGGGGTTTAGTTCTATTTTCACAGTTGATTGGAAACATGCAGACCTATTTGCAATCTATGACGGTAAGACTTGAAGAATGGAGGGTTAAGCGAAGAGATACAGAGGAGTGGATGAGGCACCGTCAATTGCCTCCAGCTTTGCAAGAACGGGTACATCGGTTTGTGCAGTACAAATGGCTTGCAACAAGAGGAGTTCATGAAGAATCAATTTTGCATTGGTTGCCCCTGGATCTCCGTCGTGAAATACAAAGGCACCTATGTCTTGGCCTTGTCCGCCGTGTGCCTTTCTTTGCACAAATGGATGACCAGCTTCTTGATGCCATTTGCGAACGCCTCACCTCATCCTTGAGTACTGAAGGCACCTATATCTTTCGAGAGGGTGATCCAGTAAATGAGATGCTGTTTATCATTAGAGGACAACTGGAGAGCTCCACAACCAATGGGGGAAGATCAGGATTCTTCAACTCCATCACCCTTAGACCTGGTGACTTCTGTGGCGAGGAATTACTGACATGGGCCTTAATGCCTAACCCGAGCATAAACTTGCCGTCTTCTACTCGAACTGTAAGGTCTCTTTGTGAAGTTGAAGCTTTTGCACTAACAGCTGAAGACCTCAAATTTGTTGCAAGTCAGTTCAGGCGACTTCACAACAAGAAACTCCAGCATGCCTTCAGGTACTATTCTCAACAATGGAGGACATGGGGTACTTGCTATTTACAAGATGCTTGGAGAAGATATAAAAAGAGAAAGCTGGCAAAGGAGTTGGCTAGACAAGAGAGCTACAACTATATGCTGATCCCTGATCAAGAGTATAATCTCAGTGATGAGCCATCAGATGGAAATTTTGTGGTTGGAAGAGACGAGAGCGCATTAACAGACAATCCAAACAATGTTCAACATCTTGGTGCCACGATTTTAGCTTCAAAATTTGCTGCAAATACAAGAAGAGGGGTTGCTCAGGAGGTTCGGGTGGTAGAGCCTGCTGCTCCTAGCTTGAAGATGCCCCGGCTGCTAAAGCCAGATGAACCTGATTTTTCTGTAGGCCATGAGGATGTTTAG 2115 0.4558 MNTAILTPASKFRPFRRRPSYAPITSDLNPYHILWRYQILEPDGDIVTYWNHVFLVTSLISLFLDPLYFFLPSVGGPACLTSDTSLGIVVTFFRTVSDLFYLLHMVMKFRTAFVAPSSRGLGRGELVMDAHTIAMRYLKSDFIIDLAATLPLPQIVIWLVIPATKKDRADQTNNTLALIVLIQYVPRLFLIFPLNRRIIKTTGVVAKTAWAGAAYNLLLYMLASHVLGASWYLLSMGRQHACWKAECAKESAAGISFCLPSFLDCKSLELEERQYWMNATRVVANCDARGHDTEFKFGMFADAFTNDVASSKFIEKYLYCLWWGLKNLSSYGQTLETSIYIGETTFCIVICIGGLVLFSQLIGNMQTYLQSMTVRLEEWRVKRRDTEEWMRHRQLPPALQERVHRFVQYKWLATRGVHEESILHWLPLDLRREIQRHLCLGLVRRVPFFAQMDDQLLDAICERLTSSLSTEGTYIFREGDPVNEMLFIIRGQLESSTTNGGRSGFFNSITLRPGDFCGEELLTWALMPNPSINLPSSTRTVRSLCEVEAFALTAEDLKFVASQFRRLHNKKLQHAFRYYSQQWRTWGTCYLQDAWRRYKKRKLAKELARQESYNYMLIPDQEYNLSDEPSDGNFVVGRDESALTDNPNNVQHLGATILASKFAANTRRGVAQEVRVVEPAAPSLKMPRLLKPDEPDFSVGHEDV* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1670 704 CDD CAP_ED 448 579 IPR000595 -
Vvi14g1670 704 Gene3D Jelly Rolls 446 566 IPR014710 -
Vvi14g1670 704 SMART cnmp_10 448 579 IPR000595 -
Vvi14g1670 704 SUPERFAMILY Voltage-gated potassium channels 42 370 - -
Vvi14g1670 704 SUPERFAMILY cAMP-binding domain-like 378 574 IPR018490 -
Vvi14g1670 704 Gene3D - 53 370 - -
Vvi14g1670 704 ProSiteProfiles cAMP/cGMP binding motif profile. 448 522 IPR000595 -
Vvi14g1670 704 Pfam Ion transport protein 48 375 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vvi14g1670 704 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 32 697 - -
Vvi14g1670 704 FunFam Cyclic nucleotide-gated ion channel 1 446 564 - -
Vvi14g1670 704 Pfam Cyclic nucleotide-binding domain 471 559 IPR000595 -
Vvi14g1670 704 Gene3D Helix hairpin bin 371 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1670 Vvi-Chr14 27931599 27936505 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1670 26 704 Ion Channels AT5G14870 71.053 0.0 1026
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1670 K05391 - vvi:100254180 1434.85