Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1661 ATGAGTACTGATGTTGTGGGTGCTGCAACACAGATTATTGTAATGGCAATTGTCATATCTTTGATATTGTTATTTCTGGGAATTGGGGTTTTGGTCATAATTCATGTTTGTATTGTTGGGAGAGCCTTTAGAGGAGGGTTTGGGAACGGTAGGATGGTTGAGAGGGGGAATCCTAGAAGCACAAGCATGTCCCTTGATGACCTAGACAAGCTTCCTTGCTTTCATTTCCAAGCCAAAGAGAAGGGCAGTAGTAGCCCTGTGGATTGTGCTGTTTGCTTGGATAACTTCAAGATGGGAGATAAGTGCAGATTGCTACCCCTATGCAACCACAGCTTCCATGCCCAATGTGTGGATTCATGGCTTCTCAAAACACCCATATGCCCAATTTGCAGAACAAGCGCTGATTTTAGGAAGGGGTCCCTAGTTTCAGGGGAAGAAAGTAGCCATTTCAGTGACACTGGAAATGAATTGAGAGAGAGCCAAACAACAGAAAGAGGCCATATGGGTGATGCTGGGATTGATTCAAGAGACAACCCAGGAGCTGTATCTGGAATTCATTTGAGTTCCAATCACTCACCCAATAATCCTGCAGCAGAACTAGCTGCATGA 609 0.4466 MSTDVVGAATQIIVMAIVISLILLFLGIGVLVIIHVCIVGRAFRGGFGNGRMVERGNPRSTSMSLDDLDKLPCFHFQAKEKGSSSPVDCAVCLDNFKMGDKCRLLPLCNHSFHAQCVDSWLLKTPICPICRTSADFRKGSLVSGEESSHFSDTGNELRESQTTERGHMGDAGIDSRDNPGAVSGIHLSSNHSPNNPAAELAA* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1661 202 MobiDBLite consensus disorder prediction 158 172 - -
Vvi14g1661 202 MobiDBLite consensus disorder prediction 182 196 - -
Vvi14g1661 202 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 10 143 - -
Vvi14g1661 202 MobiDBLite consensus disorder prediction 144 202 - -
Vvi14g1661 202 Pfam Ring finger domain 88 131 IPR001841 -
Vvi14g1661 202 ProSiteProfiles Zinc finger RING-type profile. 89 131 IPR001841 -
Vvi14g1661 202 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 135 IPR013083 -
Vvi14g1661 202 SMART ring_2 89 130 IPR001841 -
Vvi14g1661 202 FunFam RING-H2 finger protein ATL2K 63 136 - -
Vvi14g1661 202 SUPERFAMILY RING/U-box 88 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1661 Vvi-Chr14 27880415 27881023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1661 68 149 C3H Transcription Factor Family AT2G18650 45.122 1.17e-18 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1661 - K15692 vvi:100853467 382.874