Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1659 ATGATGGGACTCGGCGATTCGAGCGGCGAGTACCGAGATTCGAAGTCCGAGACCCGCTCCGTACTAGGTATCGATCTCAATGAGATCCCTTCCTCGTCCTTCGTCGAGGCCTCGCACGACGTGCCTGACGCGTACGCCGTCGTGCGGAGCTTCCACGGAGAGCTGTCACCGGCGGCTGGAGCTGCGGCGGGGCTGCCAGGGGAGGGGTGGGGGTCGGTGTGCGCTGTGTGTGGTGCGCCGGAGGTTGGAGCACAGGTTTTGGTCTGCGACGGGTGTGAGCGCGGCTTCCACCTCGTCTGCGTCGGAATGCCAGGCCGACAGGCGGGGATGCTGGAAGAATGGGTGTGCGGCGAGTGTGTGAGGAGTGGAGTTGGGAGTAAGCGATGGCCCTTGGGCTCGAAGAGGCGGCTTTTGGATATCAACGCTTCACCGCCGAGTGAAGGGGAAGGTGAGGAGTTGCCGGATTCGAGAAAGCACTCTCCGGGTGATAATTCTTTTGGTGGCAATTCATTTGGTGCCCCAGAGACATATTCGAACTTTCGGTGTGCGGGGAATGGATTTGGTTTTCCAAAAGCTTCTGGGATTTTGACACATGCTGTCAAATTGGGTCTTGAAGATATATTGCATCATACTAATAGAAGTTTTGAGGAGGTAGATTCAGGGTTTCCTCTAGGAAGGCTTAGGAGTAGTAATAATACAGCTTGTAGATTACCACCACAGGAACCAAGCGAGATGTTACTTCAGGCCCTTAAAGAGTTCATTTCGGAAAGACATGGAGTATTGGAGGAAGGTTGGCGTGTGGAACTAAAACAATCTGTGAGGGCTGGTGAACTATGTCCAGTTTTCTGTGCTCCAGATGGAAGGATATTTGAGTCAATGTCTGAAGTTGCCGTTTATCTTGGGTTAACGTCTAATTGCAATTCTGTGGATACTGAAATAAGAAGTGATGGGTCTGCTTCACTGAAGAAAAGATCGCATTTATCCAAAAGAAGAAAGTCAACAAGGCTTTCAATTGCCAATAGCTCTGCTGAAAATAAAGACGCTTTGCTAACTGATTTTTGTAAGGATATCTCATCTGATGTTCAAAGTATGGAACTTTGTGCTAGTAATCTTGGGAATAGTGTAAAAGTAACTGAAGCTGCGCCAGAAGAAAATGGTGGCACTGGCTTGCAGCAACATAATAATGGACTTCCTGTTCAGTTTGAAGATTTCTTTGTTCTTTCTCTGGGGGAGGTTGATGTGAGACCCTCATATCATGATGTTAATCAGCTCTGGCCTGTAGGCTATAAATCCTGTTGGCATGATAAGCTTACTGGGTCTCTTTTTATGTGTGATGTCTCTGATGGTGGTGATTCTGGACCTATTTTCAAGGTCAAGAGGTGTGCATGCTCTGCAATTCCCCTTCCAAATGGGTCAACTGTGCTCTGTAGGCCCAACCTTGGCCAATCTAACGGTCAAGATAAAGAAAAAAGCAATGATATGATTTCTTTGAGTATGGACTATGACGAGGATGGCAGTTTACAGACACTTCTTGCAGACCCTTCCCCACCAATGGAAAATGACATTTTATCCTGTATAAGGAGTAGTTCTAATGGATCTTGTTGTGTTCAGACATTGAACAGCTTGCTTCTGGAGGATAATTCTCTTCATGAGAGTTCTGGCGAATTTTTATCTGATCATTCTAGATTGAAAGATGAAATTGGTGAGTTTTCATTGCAAGGGCGTTCATCATCTTCAGTATGGAATTTGGTGTCTCAAAAATTCATTGATGCTTGCTGTGAAACCTATAAACGAACTGGCAGCCTCAGGTTCTTCTGTGAGCATGTTAAACTTGGAGCAAGCACACTGCCCTGGGATATCATGGACGAAAGTAGCAAAGGGAGTTATACTTCCTTAGATAAATTTTGCAGTTCACCAGGCTCTGTGTGCATGCCATCTGTAATTCAGGGTGAGAATGAACTTCAGACTCAATGTGAAGTACTGGCAAAGTGGCTAGATCAAGATAGGTTTGGTTTAGATGTGGAATTTGTGCAAGAGATGCTAGAACAGCTTCCTGGTGTCTGTGCCTGTTCACAGTATAAGTTGCTGAACAATAGAAGCTACCATTCTACATTATTAACAGTTGGAAATGGTCTCTTACTGGCTGAAACAGAGAATGGAGTACAAAGTAAGGGAGAGGAAGCATTAGATTGTTTATTTGGAGGATCCAAAAGAGCTAGAAAATATACGGTTGGTGATCCTCTAATGGATGATTTTTGTCCTCCTCCTGGAAATCCTTTGGGTTCAAGGCTTCCTCCTGATCTTGTTGGTGATGTTATTCAGGTATGGGAGTCACTATGGCGTTTTTATGAAATCTTGGGTTTAAAAGAGCCATTTTCAATTGAGGAACTTGAAGAGGAACTTATTTGCCCATGGTCTGATGACTTAAATCTTCTAGAGAAATTTGGAACAGAAACCCAGGAAAATCGAGACATAACTCCAACTAGACCTAGTGGTGCAAGTGGACACATCCCATCCTCAAGCACTGACTCTGGTCCAGAAGTTTCTACAGGCAATCCCCATGCATTCATACAAATGGAAACAGGGCAAAAAAAGGAAGCAGCCCAAGCTAAGCTAGCATCTGTTACTTACAGCAGATGCTCTGGTGTAACTCTGACAAAAGCGCACAACTCGCTGCTAAAAGTTCTAGTAAGTGAACTTCAGTTCAAGGTTGCTGCCCTTGTAGATCCAAATTTTGATTCTGGAGAATCAAAATCAAGACGGGGAAGGAAGAAAGATGCAGATAATGCAATTCCCACAAAAAAAACCAAGCTCAATATGCTCCCTATTAATGAATTGACTTGGCCAGAATTAGCTCGGAGATATATATTATGTGTCTTATCCATGGATGGTAACCTTGACTCTGCTGAGATTACCATTCGTGAAAGTGGCAAAGTGTTTCGCTGCTTACAAGGTGATGGTGGGGTGCTTTGTGACTCACTTACCGGAGTTGCAGGAATGCAAGCAGATGCACTTTTGTTTGCAGAGGCCAGAAAACAGATTTTTGGTTCTTTGAACAGAGAAGATGACATTCTTACTATAGAAGAGAAAGGATCTGATGCTACTGGTGACCATGACAGGATTGTGGTGAATGATGGCAATATCCCAGAGTGGGCACAGGTTCTGGAACCTGTTAGGAAACTACCTACGAATGTGGGAACCAGAATTAGAAAGTGTATTTATGAGGCGTTGGAGAAGGATCCACCAGAATGGGCAAAGAAAATATTGGCGCATTCAATCAGTAAGGAGGTTTACAAGGGCAATGCATCAGGACCTACAAAGAAAGCCGTTCTTTCAGTGCTAGGAATTGTGCATGATGAAGGTCTAAAAAGCAAACCTGATAAGGAGAGAAAGAGGAAACGTGTCATCTCTATTCCTGACATTATCATGAAACAATGCCGAATTACATTACGTCGTGGTGCTGCAGCAGATGATGCCAAAGTTTTCTGCACTCTGTTGGGAAGCAAACTCATTAACTCTATCGATAATGACGATGAGGGACTTCTTGGAACACCAGCCATGGTGTCACGGCCTTTGGACTTTAGAACGATTGATTTGAGATTGGCAGTTGGGGCTTATGGTGGATCATGGGAAACTTTTCTTGAGGATGTCCGAGAGTTATGGAATAATATACACACTGCTTATGCGGATCAGCCTGATTCAGTTGAGCTGGCTAGGACATTATCCCAAAATTTCGAATCAATGTTTGAAAAGGAGGTTCTCCCCCTTGTCCAAAAGTTTACGGAGTATGCTAAATCAGAATGCTTAAGTGCAGAAACAGAGAAGGAAATAGATGATTTTCTTGTTTCTGCTAGTGAAATTCCCAAAGCCCCTTGGGATGAGGGGGTCTGCAAAGTATGTGGCATCGATAAAGATGATGACAGTGTTCTGTTGTGTGATATGTGTGATGCAGAGTATCATACTTATTGCTTGAATCCTCCACTTGCAAGAATTCCTGAAGGAAACTGGTACTGTCCTTCCTGCGTTGCTGGTATAAGTATGGTTGATGTTTCGGAACATACTCATGTCATTGCGCAGCGCCAAGGTAAAAATTGTCAGGGAGACTTTACTCATGCTTATTTGGAGTCACTTGCACATCTAGCTGCTGCAATGGAAGAAAAAGAGTATTGGGAGCTCAGTGTAGACCAGAGGACCTTTCTGTTTAAATTTCTATGTGATGAGTTGCTGAACACAGCTCTTATACGTCAACACCTTGAGCAGTGTGCTGAATCATCGGCTGAGTTACAGCAGAAATTGCGTTCCATTTCTGTGGAATGGAAAAACCTAAAGCTCAAAGAAGAAAACCTGGCTGCAAGAGCTCCAAAAGTTGACTCTGGTATGATTTATGTGGCTGGAGAAGTGGGTACAGAAGGAGGGCTTTCTAGTGCACTAACAAATAATGGTAAATGTATTGCAAAACCGCATACCTTGAGTGACAGACCTAAAGATTTTGGTATCTTATCTAATGACCAGCTACAAGTGGAGGGTGGTAGTGAGGGAATCAGGCCCAACGGTCTGGACAAACACCCATCTAGCAATTGTTCAGAGGGAAATTGCACTTTGAAGCCTATTGATAATGAAGGTCAATTAAAAGAGGTCCATGCTGTTGTAGATGAGACTCAAGTATCTGTTGATCATTTCCCCCACATGGTCTACCAAGGAAACGGTAGCTCTTGTAGACCAAATGAACTGCATTTACAAAATCCTTTGCAGCAAGAAATGGATGGCTTGGGTACAGAATTTAATTTACAGGTCAACATGTGTGAAAATATGGAGAAGAATGATCTGCAAGGACTTCATCACCCTTCTGACATAAGGATTGTCCATGTAGCTGAGCATGATTCTGAGCTGAACTCCATCAAGAATGATATTTCAGATCTACAGGACTCAATGGCTAGTATAGAGTCACAGCTTCTGAAGTTATCTGTGCGACGGGAGTTTTTGGGTAGTGATTCTGCTGGTCGATTGTATTGGATCTTAGCCAAGCCTGGTTGGCATCCTTGGGTGCTTGTTGATGGAAGTATGGCACTTCAGAAGAAAGAAAAAATGAGATATCTCAAAAACCCAGGGGACAGTTCAGTTCAGAAGAATTCTACTTCCCTCAGCATGGATATTCTCTCAACTTTGGGGGGCTCAAACGCTTCCTGTCCATTTCTATATAGGCCAAATGCTTCTATTTCCATTTGTTCTCAATGGGTTTCTTATCAATCTGGTGAAGAAATTGATGCACTTATTGGATGGTTAAAAGATGCTGACCCTAGGGAAAAAGAACTCAAAGAGTCCATTTTGCACTTGCATAAACTAAGATTTCGGGACTGGAAACTGACTGGGGACCCTGATCAGGTTGATTCACAAACAACTTTGTCAAGGTTCCCAAATAGCGAAAATGCATTTTCTGATGGTCTTCTTACCAAGGCAGGCATTTTGCTGGGGAAGAAATATGGCCCTTGGTTTGAGCCAGAAATTGCTGACAGCTCGAAGAAGTGGGACCTGAGGTCAAAAGTAACTAATGAAAGCAAAATGTATAGATGTGAATGCTTGGAACCTATTTGGTCTTCAAGGCATCATTGCCCCTCTTGTCACAGAACTTTCTTCACTGATATTCAACTTGAGGAGCATAATGATGGCAGTTGCAGGTCAGGTCCACCAACCTCTGAGAAGAGCAAGGAAAATAGCAGTCATTTAAAAGGTAAGGGGACTATGAAATCCAAAATCTCCCGGGAGGAGAGCACTGGTGACATTGACATGGTTGAAATACCAAAAGGTGGCTGTTCTCAGCCCAGGTCGAGATTGATTAAATTTCAAAATGAAGGATTAGTGTGCCCATATGATTTTGAAGAGATCTGTTCCAAGTTTGTCACCAAAAACTCTAACAAGGAATTGGTGCAGGAAATAGGTCTTATTGGTTCCAAAGGGGTTCCATCATTTGTCTCAAGTAGACCTCCTTATATCAGTGATGCTACACTATTGTTAGTTCCTAGTGGTGAACTTAAAGCCACTGGAGATATGATGCTTGCACAGGGGAACAGGATTCCTGCTGGAGGCAGTGGAAGCTTTTCTGATAATTCTTCCAGAGATTCTGCTGCAAATGAAACCAGTGCAGCATCTAGAACTGACAAATCAGCTTTGGAGCAAAAAGATAAAAAGTACTCTTTAAATAATAATGGTCCAGAAATGGAGGTTGGTCGCTGTTGTGTAATCCCTCAGTCTTCACTAAGACCATTAGTTGGCAAAGTTTACCAGATTTTGAGGCAACTCAAGATCAACTTACTTGATATGGATGCTGCACTCCCTGAAGAGGCTCTGAAACCATCAAGGGCTGACTTAGAAAAGAGATTGGCATGGCGTGCTTTTGTTAAATCTGCAGAGACAATCTTTGAGATGGTTCAAGCAACAATCATGCTCGAGGACATGATTAAGACCGAGTACTTGATGAATGGATGGTGGTATTGGTCATCACTCTCTGCTGCTGCCAAGACTTCTACCGTTTCTTCCCTTGCCCTGCGCATATACTCTCTGGATGCTGCCATTGCTTATGAGAAGATCTCATCCAATTTGGATCTGACTGACAGTCCCAAGCCCAGCAGCAAACCTGATCCGAAGCCAGTGCCCAATTTGGATACCATGGAAAAGTCAAAGCTGGGCAGAAAACAAAACAAGAGGAGGAAAGAATCAGAAGGTTGA 6723 0.4364 MMGLGDSSGEYRDSKSETRSVLGIDLNEIPSSSFVEASHDVPDAYAVVRSFHGELSPAAGAAAGLPGEGWGSVCAVCGAPEVGAQVLVCDGCERGFHLVCVGMPGRQAGMLEEWVCGECVRSGVGSKRWPLGSKRRLLDINASPPSEGEGEELPDSRKHSPGDNSFGGNSFGAPETYSNFRCAGNGFGFPKASGILTHAVKLGLEDILHHTNRSFEEVDSGFPLGRLRSSNNTACRLPPQEPSEMLLQALKEFISERHGVLEEGWRVELKQSVRAGELCPVFCAPDGRIFESMSEVAVYLGLTSNCNSVDTEIRSDGSASLKKRSHLSKRRKSTRLSIANSSAENKDALLTDFCKDISSDVQSMELCASNLGNSVKVTEAAPEENGGTGLQQHNNGLPVQFEDFFVLSLGEVDVRPSYHDVNQLWPVGYKSCWHDKLTGSLFMCDVSDGGDSGPIFKVKRCACSAIPLPNGSTVLCRPNLGQSNGQDKEKSNDMISLSMDYDEDGSLQTLLADPSPPMENDILSCIRSSSNGSCCVQTLNSLLLEDNSLHESSGEFLSDHSRLKDEIGEFSLQGRSSSSVWNLVSQKFIDACCETYKRTGSLRFFCEHVKLGASTLPWDIMDESSKGSYTSLDKFCSSPGSVCMPSVIQGENELQTQCEVLAKWLDQDRFGLDVEFVQEMLEQLPGVCACSQYKLLNNRSYHSTLLTVGNGLLLAETENGVQSKGEEALDCLFGGSKRARKYTVGDPLMDDFCPPPGNPLGSRLPPDLVGDVIQVWESLWRFYEILGLKEPFSIEELEEELICPWSDDLNLLEKFGTETQENRDITPTRPSGASGHIPSSSTDSGPEVSTGNPHAFIQMETGQKKEAAQAKLASVTYSRCSGVTLTKAHNSLLKVLVSELQFKVAALVDPNFDSGESKSRRGRKKDADNAIPTKKTKLNMLPINELTWPELARRYILCVLSMDGNLDSAEITIRESGKVFRCLQGDGGVLCDSLTGVAGMQADALLFAEARKQIFGSLNREDDILTIEEKGSDATGDHDRIVVNDGNIPEWAQVLEPVRKLPTNVGTRIRKCIYEALEKDPPEWAKKILAHSISKEVYKGNASGPTKKAVLSVLGIVHDEGLKSKPDKERKRKRVISIPDIIMKQCRITLRRGAAADDAKVFCTLLGSKLINSIDNDDEGLLGTPAMVSRPLDFRTIDLRLAVGAYGGSWETFLEDVRELWNNIHTAYADQPDSVELARTLSQNFESMFEKEVLPLVQKFTEYAKSECLSAETEKEIDDFLVSASEIPKAPWDEGVCKVCGIDKDDDSVLLCDMCDAEYHTYCLNPPLARIPEGNWYCPSCVAGISMVDVSEHTHVIAQRQGKNCQGDFTHAYLESLAHLAAAMEEKEYWELSVDQRTFLFKFLCDELLNTALIRQHLEQCAESSAELQQKLRSISVEWKNLKLKEENLAARAPKVDSGMIYVAGEVGTEGGLSSALTNNGKCIAKPHTLSDRPKDFGILSNDQLQVEGGSEGIRPNGLDKHPSSNCSEGNCTLKPIDNEGQLKEVHAVVDETQVSVDHFPHMVYQGNGSSCRPNELHLQNPLQQEMDGLGTEFNLQVNMCENMEKNDLQGLHHPSDIRIVHVAEHDSELNSIKNDISDLQDSMASIESQLLKLSVRREFLGSDSAGRLYWILAKPGWHPWVLVDGSMALQKKEKMRYLKNPGDSSVQKNSTSLSMDILSTLGGSNASCPFLYRPNASISICSQWVSYQSGEEIDALIGWLKDADPREKELKESILHLHKLRFRDWKLTGDPDQVDSQTTLSRFPNSENAFSDGLLTKAGILLGKKYGPWFEPEIADSSKKWDLRSKVTNESKMYRCECLEPIWSSRHHCPSCHRTFFTDIQLEEHNDGSCRSGPPTSEKSKENSSHLKGKGTMKSKISREESTGDIDMVEIPKGGCSQPRSRLIKFQNEGLVCPYDFEEICSKFVTKNSNKELVQEIGLIGSKGVPSFVSSRPPYISDATLLLVPSGELKATGDMMLAQGNRIPAGGSGSFSDNSSRDSAANETSAASRTDKSALEQKDKKYSLNNNGPEMEVGRCCVIPQSSLRPLVGKVYQILRQLKINLLDMDAALPEEALKPSRADLEKRLAWRAFVKSAETIFEMVQATIMLEDMIKTEYLMNGWWYWSSLSAAAKTSTVSSLALRIYSLDAAIAYEKISSNLDLTDSPKPSSKPDPKPVPNLDTMEKSKLGRKQNKRRKESEG* 2241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1659 2240 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1657 1777 IPR028941 -
Vvi14g1659 2240 CDD PHD1_Lid2p_like 1296 1341 - -
Vvi14g1659 2240 MobiDBLite consensus disorder prediction 817 853 - -
Vvi14g1659 2240 Pfam Bromodomain 1185 1238 IPR001487 GO:0005515
Vvi14g1659 2240 PANTHER OS02G0192300 PROTEIN 11 2236 - -
Vvi14g1659 2240 Coils Coil 1623 1650 - -
Vvi14g1659 2240 ProSitePatterns Zinc finger PHD-type signature. 74 119 IPR019786 -
Vvi14g1659 2240 MobiDBLite consensus disorder prediction 138 168 - -
Vvi14g1659 2240 ProSiteProfiles Zinc finger PHD-type profile. 1294 1344 IPR019787 -
Vvi14g1659 2240 MobiDBLite consensus disorder prediction 2025 2068 - -
Vvi14g1659 2240 MobiDBLite consensus disorder prediction 1888 1933 - -
Vvi14g1659 2240 Gene3D - 397 493 - -
Vvi14g1659 2240 MobiDBLite consensus disorder prediction 2026 2052 - -
Vvi14g1659 2240 SUPERFAMILY FYVE/PHD zinc finger 69 131 IPR011011 -
Vvi14g1659 2240 SUPERFAMILY FYVE/PHD zinc finger 1284 1345 IPR011011 -
Vvi14g1659 2240 ProSiteProfiles FYR domain FYRN motif profile. 396 449 IPR003888 GO:0005634
Vvi14g1659 2240 ProSiteProfiles Zinc finger PHD-type profile. 71 122 IPR019787 -
Vvi14g1659 2240 Gene3D - 1139 1259 IPR036427 GO:0005515
Vvi14g1659 2240 Pfam Methyl-CpG binding domain 251 308 IPR001739 GO:0003677
Vvi14g1659 2240 SMART PHD_3 73 120 IPR001965 -
Vvi14g1659 2240 SMART PHD_3 1296 1342 IPR001965 -
Vvi14g1659 2240 ProSitePatterns Zinc finger PHD-type signature. 1297 1341 IPR019786 -
Vvi14g1659 2240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 124 IPR013083 -
Vvi14g1659 2240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1296 1343 IPR013083 -
Vvi14g1659 2240 MobiDBLite consensus disorder prediction 2217 2240 - -
Vvi14g1659 2240 MobiDBLite consensus disorder prediction 2199 2240 - -
Vvi14g1659 2240 CDD PHD_SF 73 119 - -
Vvi14g1659 2240 ProSiteProfiles FYR domain FYRC motif profile. 554 697 IPR003889 GO:0005634
Vvi14g1659 2240 MobiDBLite consensus disorder prediction 1902 1928 - -
Vvi14g1659 2240 SUPERFAMILY Bromodomain 1131 1251 IPR036427 GO:0005515
Vvi14g1659 2240 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 251 318 IPR001739 GO:0003677
Vvi14g1659 2240 Pfam PHD-finger 1296 1342 IPR019787 -
Vvi14g1659 2240 Pfam PHD-finger 73 121 IPR019787 -
Vvi14g1659 2240 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1375 1419 IPR028942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1659 Vvi-Chr14 27851241 27871555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1659 15 2240 C2H2 Transcription Factor Family AT3G01460 45.382 0.0 1757
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vvi14g1659 WSD 1.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1659 K22768 - vvi:100245816 4405.51