Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1658 ATGGATTCCTGCCGTCTTTTCTTTGATCCTTCCTCTGGCCACGGGAACATGCTCTTCCTCGGGAACGGTGATTCTCTTTTTCGAGGACCAAGATCAATTATGAACATCGAGGAAACCTCGAAAAAGAGGCCATTTTTCACCTCGCCAGAAGACATGTTCGATGAGGAATATTACGACGAACAGATGCCGGAGAAGAAACGTCGCCTCACTCCTGAACAGGTACATCTGCTGGAGAAGAGCTTTGAGGCGGAGAACAAACTGGAGCCGGAGCGCAAGACCCAGTTGGCCAAGAAGCTGGGATTGCAGCCCAGGCAGGTGGCGGTCTGGTTCCAGAATCGCCGAGCACGGTGGAAGACTAAGCAGTTGGAGAGGGACTATGATCTCCTCAAATCTTCTTATGATTCCCTTGTGTCTGAATATGACTCCATCCTCAAGGAGAAGGAGAAGCTCAAATCTGAGGTTGTTTCCTTAACTGAGAAGCTGCAAGCTAAAGAGGTGACTGGAACACCAACATTAACTGTTCAGAAAGTTGAACCACTTCAGGCAGATGCAGCCGACGTGCCACCTGTCCCATGCAGCGTAAAGGTTGAGGACCGCCTGAGTTCTGGAAGTGGCGCAAGTGCAGTGGTCGATGAAGATGGTCCACAGCTCCTGGACAGTGGTGACTCCTACTTCCAAAATGCTGAATACCCTGGATGCTTGGGTGTCCAATCGGAAGAGGATGATGGGAGTGATGATGGGCAGAGTTATTTCTCTGATGCCCTTGTGTTGCCCGAGCACCATCACGAGGAGGGAGAGGCTTTGTTGTGGGTTTGGCCTTAA 822 0.5085 MDSCRLFFDPSSGHGNMLFLGNGDSLFRGPRSIMNIEETSKKRPFFTSPEDMFDEEYYDEQMPEKKRRLTPEQVHLLEKSFEAENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDSLVSEYDSILKEKEKLKSEVVSLTEKLQAKEVTGTPTLTVQKVEPLQADAADVPPVPCSVKVEDRLSSGSGASAVVDEDGPQLLDSGDSYFQNAEYPGCLGVQSEEDDGSDDGQSYFSDALVLPEHHHEEGEALLWVWP* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1658 273 SMART HOX_1 63 124 IPR001356 GO:0003677
Vvi14g1658 273 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 54 201 IPR045224 GO:0003700
Vvi14g1658 273 Pfam Homeobox associated leucine zipper 120 162 IPR003106 GO:0006355|GO:0043565
Vvi14g1658 273 Gene3D - 58 126 - -
Vvi14g1658 273 Pfam Homeodomain 65 118 IPR001356 GO:0003677
Vvi14g1658 273 MobiDBLite consensus disorder prediction 233 252 - -
Vvi14g1658 273 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Vvi14g1658 273 MobiDBLite consensus disorder prediction 202 222 - -
Vvi14g1658 273 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Vvi14g1658 273 Coils Coil 133 167 - -
Vvi14g1658 273 FunFam Homeobox-leucine zipper protein HAT5 58 122 - -
Vvi14g1658 273 CDD homeodomain 65 121 IPR001356 GO:0003677
Vvi14g1658 273 PRINTS Lambda-repressor HTH signature 91 100 IPR000047 GO:0003677
Vvi14g1658 273 PRINTS Lambda-repressor HTH signature 100 116 IPR000047 GO:0003677
Vvi14g1658 273 SUPERFAMILY Homeodomain-like 52 122 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1658 Vvi-Chr14 27846654 27848562 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1658 1 273 Homeobox Transcription Factor Family AT3G01470 60.000 9.51e-102 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vvi14g1658 Homeodomain 2.8e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1658 K09338 - vvi:100257769 532.717