Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1643 ATGAGGACCTCGTATCACTCGGTTCATGAGCCAACCTGTGGAATTTGTAAGAAACACTGCAGATCTTTTGAATCTCTCAGGGAGCATCTCATAGGGCCGTTGCCAAAAGTGGAATGCGCAAGAATATTCAGTGTCCGCGGATGCAACCTCTGCTTAGATATCCTTGGCAGCCCTAATGCACTTAGGGCTCATCGAGGGACATGCCAACTTTCACGCGGAAACACCGGAGCGCTGCTTTCTCGCATGGCTAACCTAGGTATTCAGGATGACCTGAATAGCAGAACAAGAGGCTCAAAGGTGGTTGCACTGGGCTGCAAAATGGTAGGGGGTGGAACCGATGGCTCGCTGGATCTTTGCGCAAGGGTTTGCCTCATCGATGAATATGAAAACATCATCTTTCATACTTATGTCAAGCCCCAAATTCCAGTCACAAACTACAGGTATGAAACCACAGGGACAAGGCCCGAATTCTTGAGGGATGCAATGCCAGTGAAGCAAGTCCAAAGAAAAATCCAAGACTTCCTTTGCAATGGAGAGCCCATATGGAAGATTCGTTCTAGAGGTGGAAAAGCTAGGATTCTCGTGGGTCATGGTTTGGATCATGACCTGGACTGTCTACAAATGGAGTACCCAACGCTAATGATCAGGGACACAGCTAAGTATCCTCCATTGATGAAAACAAGCAAGCTCAGCAACTCACTGAAGTATCTGACACAAGCATACCTCGGGTATGACATCCAAACTGGCATACAAGATCCTTATGAGGATTGTGTTGCAACAATGAGGCTTTACATGAGAATGAGATCCCAAAGTCATAAAATAGAGGACTACCCGCTCGCGTCTGACCCGCAGAACCGAAACAACTTTGCATCAGGGAGGCAAAGTGAGCTAGAGAGGATGACCCCAGATGAAATGTTGGAAATCTCCAGGTCTGATTACTATTGTTGGTGCCTGGACACGAAGGAAGGCTCCTGA 975 0.4749 MRTSYHSVHEPTCGICKKHCRSFESLREHLIGPLPKVECARIFSVRGCNLCLDILGSPNALRAHRGTCQLSRGNTGALLSRMANLGIQDDLNSRTRGSKVVALGCKMVGGGTDGSLDLCARVCLIDEYENIIFHTYVKPQIPVTNYRYETTGTRPEFLRDAMPVKQVQRKIQDFLCNGEPIWKIRSRGGKARILVGHGLDHDLDCLQMEYPTLMIRDTAKYPPLMKTSKLSNSLKYLTQAYLGYDIQTGIQDPYEDCVATMRLYMRMRSQSHKIEDYPLASDPQNRNNFASGRQSELERMTPDEMLEISRSDYYCWCLDTKEGS* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1643 324 Pfam Exonuclease 117 263 IPR013520 -
Vvi14g1643 324 CDD REX4_like 101 264 IPR037431 GO:0006364|GO:0008408
Vvi14g1643 324 SUPERFAMILY Ribonuclease H-like 101 270 IPR012337 -
Vvi14g1643 324 FunFam RNA exonuclease 4 96 283 - -
Vvi14g1643 324 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 3 319 IPR047021 GO:0004527
Vvi14g1643 324 Gene3D - 96 282 IPR036397 GO:0003676
Vvi14g1643 324 SMART exoiiiendus 99 273 IPR013520 -
Vvi14g1643 324 MobiDBLite consensus disorder prediction 281 295 - -
Vvi14g1643 324 MobiDBLite consensus disorder prediction 277 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1643 Vvi-Chr14 27753828 27755451 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1643 1 320 C2H2 Transcription Factor Family AT3G27970 75.232 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1643 - - vvi:100249235 675.626