Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1636 ATGGAGGAAGTGAATCAGTATAAGAAAGGGTTATGGACATTGGAAGAAGACAAGATCCTCATGGATTATGTGAAGGAGCATGGGAAAGGGCAGTGGAATCGCATTGCTAAGAAAACAGGTTTGAGGAGATGTGGGAAGAGCTGCAGGTTAAGGTGGATCAATTATCTAAGCCCAAATGTGAAGCGTGGAGATTTTACTGCAGAGGAAGAAGACCTCATCATTAGACTCCACAAACTCCTTGGAAACAGGTGGTCTTTAATTGCTGGACGAGTACCAGGACGAACAGACAATCAAGTGAAGAACTACTGGAACACTCATTTGAGCAAAAAGCTGGGCATCAAAAAGAAAAACAACGGAGCTAATGTATCTTCAACTCTAACAAACACAAGGGAAATGCAGAAAGGATCCGAGCCACTCATGAATTCCAGTTCATCCCCTTCTTGTGGAAGCAGCAGAGGAGCTGCGGAAGCCAAAGCAAATGAAGGCACTCTGCAGCAGAGCCTTGAGGCCCCAGACTGGCATGATCAACTGGTTATTGGGGAGGGTTACTTGGACTCCTTTTGGGCTATTAATGATGATTTAGAGCTCACAACCGACAGTATAATGGAGTTTCTAAATGGGTGTTCTCTTGATCTTGGTCGGCATGGTTTCTGA 654 0.448 MEEVNQYKKGLWTLEEDKILMDYVKEHGKGQWNRIAKKTGLRRCGKSCRLRWINYLSPNVKRGDFTAEEEDLIIRLHKLLGNRWSLIAGRVPGRTDNQVKNYWNTHLSKKLGIKKKNNGANVSSTLTNTREMQKGSEPLMNSSSSPSCGSSRGAAEAKANEGTLQQSLEAPDWHDQLVIGEGYLDSFWAINDDLELTTDSIMEFLNGCSLDLGRHGF* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1636 217 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Vvi14g1636 217 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 141 - -
Vvi14g1636 217 Gene3D - 8 61 - -
Vvi14g1636 217 MobiDBLite consensus disorder prediction 118 167 - -
Vvi14g1636 217 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Vvi14g1636 217 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Vvi14g1636 217 Gene3D - 63 137 - -
Vvi14g1636 217 SUPERFAMILY Homeodomain-like 7 103 IPR009057 -
Vvi14g1636 217 CDD SANT 12 56 IPR001005 -
Vvi14g1636 217 CDD SANT 65 107 IPR001005 -
Vvi14g1636 217 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 56 IPR017930 -
Vvi14g1636 217 FunFam Transcription factor WER 63 134 - -
Vvi14g1636 217 SMART sant 8 58 IPR001005 -
Vvi14g1636 217 SMART sant 61 109 IPR001005 -
Vvi14g1636 217 MobiDBLite consensus disorder prediction 118 151 - -
Vvi14g1636 217 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Vvi14g1636 217 Pfam Myb-like DNA-binding domain 62 107 IPR001005 -
Vvi14g1636 217 FunFam MYB-related transcription factor 8 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1636 Vvi-Chr14 27708224 27709246 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1636 5 210 MYB Transcription Factor Family AT5G40330 53.456 4.21e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi14g1636 Myb_DNA-binding 1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1636 K09422 - vvi:104881670 447.203