Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1623 ATGCTCTATAAAAGCCATAGGAACCTCTATTGGTTTATTGCCTTTCTTCTCTGTCCCTCTCTCTCTTTTCCCAAAATGGATAAAAAACCCTGCAATTCTCAGGATGCTGAAGTGAGAAAAGGGCCATGGACCTTAGAAGAAGACTTGATTCTTATCAACTATATTGCTAATCATGGTGAAGGAGTTTGGAACTCTCTAGCAAAATCTGCTGGACTGAAACGTACTGGAAAAAGTTGCCGCCTCCGATGGCTGAACTACCTGAGGCCTGATGTCCGCAGAGGTAATATCACAGATGAAGAACAACAGTTGATCATGGAACTGCATGCTAAGTGGGGGAACAGGTGGTCCAAAATCGCAAAGCATCTGCCAGGAAGAACCGATAACGAGATTAAGAATTTCTGGAGGACCAGAATCCAAAAGCACATAAAGAATGCAGAAACATTCACTGCGCAGAGTTCTGATCAGACACATGATCAAGCAACTACAAGCCAAGTCATGGGTGCTGCACATGTTGCTGATTCTTATTCTCCACCATCCTACCCTGCCAATCTCGAGGCTTTTCCGGGTCCTTCATCGGCTGAATCCAATGATAATTTCTGGACCATGGAAGACATCTGGTCTATGCAGCTACTTAATGGAGATTAA 645 0.4403 MLYKSHRNLYWFIAFLLCPSLSFPKMDKKPCNSQDAEVRKGPWTLEEDLILINYIANHGEGVWNSLAKSAGLKRTGKSCRLRWLNYLRPDVRRGNITDEEQQLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKHIKNAETFTAQSSDQTHDQATTSQVMGAAHVADSYSPPSYPANLEAFPGPSSAESNDNFWTMEDIWSMQLLNGD* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1623 214 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 142 IPR017930 -
Vvi14g1623 214 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 34 159 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vvi14g1623 214 Gene3D - 97 166 - -
Vvi14g1623 214 SUPERFAMILY Homeodomain-like 38 134 IPR009057 -
Vvi14g1623 214 SMART sant 92 140 IPR001005 -
Vvi14g1623 214 SMART sant 39 89 IPR001005 -
Vvi14g1623 214 Gene3D - 40 92 - -
Vvi14g1623 214 Pfam Myb-like DNA-binding domain 93 136 IPR001005 -
Vvi14g1623 214 Pfam Myb-like DNA-binding domain 40 87 IPR001005 -
Vvi14g1623 214 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 35 87 IPR017930 -
Vvi14g1623 214 CDD SANT 97 136 IPR001005 -
Vvi14g1623 214 ProSiteProfiles Myb-like domain profile. 35 87 IPR001005 -
Vvi14g1623 214 CDD SANT 42 87 IPR001005 -
Vvi14g1623 214 FunFam Myb-related protein 305 97 165 - -
Vvi14g1623 214 FunFam Myb transcription factor 40 92 - -
Vvi14g1623 214 ProSiteProfiles Myb-like domain profile. 88 138 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1623 Vvi-Chr14 27556502 27560219 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1623 34 214 MYB Transcription Factor Family AT3G01530 59.016 9.66e-76 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi14g1623 Myb_DNA-binding 3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1623 K09422 - vvi:100233097 397.512