Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1619 ATGGCTTCTGCTGGCATTCCACCTGCTTCGGCGGTTGGAAAACCTAGTGGCAACACAATGTTTGTTGATAAGCTGCCGGAAGAAATCAATGAAATGAAGATCAGGGATGACAAGGTTGAAAAGGAAATGGAAGCAACAGTGGTCGATGGAAATGGAACTGAGACAGGGCATATTATTGTAACAACTATAGGTGGTAGAAATGGTCAACCCAAACAGACCATAAGTTACATGGCAGAGCGTGTTGTTGGACAGGGTTCATTTGGAATTGTATTTCAGGCTAAGTGCCTAGAAACTGGAGAAACCGTTGCAATCAAGAAGGTTTTACAGGATAAGAGATATAAGAACCGTGAGTTGCAAACAATGCGTCTTCTTGACCATCCAAATATTGTCTCTCTCAAACACTGCTTCTTTTCAACCACGGACAAGGATGAACTCTATCTCAATTTGGTGCTTGAATATGTACCTGAGACGGTTTATCGTGTGGCTAAACACTATAGCAGGGCAAATCAACGGATGCCTCTGATATATGTCAAACTCTACACATACCAGATTTGTAGAGCTTTGGCATACATTCATGGGGTTGTAGGAGTGTGCCACAGAGATATTAAGCCACAGAATCTATTGGTTAATCCCCATATTCATCAGCTCAAGCTATGTGATTTTGGGAGTGCAAAAGTTCTGGTTAAAGGTGAGCCAAATATATCATATATTTGTTCTCGTTATTATCGAGCACCAGAACTCATATTTGGTGCAACGGAGTACACAACTGCAATTGACATGTGGTCTGTGGGTTGTGTCCTTGCGGAACTGCTTCTTGGACAGCCTCTCTTTCCAGGTGAAAGCGGAGTTGATCAGCTTGTTGAGATAATCAAAGTACTTGGGACGCCAACTCGTGAGGAAATCAAGTGTATGAATCCAAACTATACTGAGTTTAAATTCCCACAAATCAAGGCTCACCCCTGGCACAAGATTTTTCACAAGCGCATGCCCCCAGAAGCAGTAGATCTTGTCTCTAGACTTCTTCAATACTCTCCAAATCTAAGGTGTACTGCTTTGGAGGCCTGTATTCACCCGTTCTTCGATGAACTGCGCGACCAAAATTCCCGTCTCCCCAATGGCCGCCCATTGCCTCCTCTCTTCAACTTTAAGCCTCAAGGTTCATTCTCTCTTCATTTCCCTTTCGTACCTGTCTATCCAACCGTGAAATTTGATATGATGATAACACATTGA 1230 0.4309 MASAGIPPASAVGKPSGNTMFVDKLPEEINEMKIRDDKVEKEMEATVVDGNGTETGHIIVTTIGGRNGQPKQTISYMAERVVGQGSFGIVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNIVSLKHCFFSTTDKDELYLNLVLEYVPETVYRVAKHYSRANQRMPLIYVKLYTYQICRALAYIHGVVGVCHRDIKPQNLLVNPHIHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDMWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCTALEACIHPFFDELRDQNSRLPNGRPLPPLFNFKPQGSFSLHFPFVPVYPTVKFDMMITH* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1619 409 FunFam Shaggy-related protein kinase kappa 156 392 - -
Vvi14g1619 409 ProSiteProfiles Protein kinase domain profile. 76 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g1619 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Vvi14g1619 409 ProSitePatterns Protein kinases ATP-binding region signature. 82 106 IPR017441 GO:0005524
Vvi14g1619 409 CDD STKc_GSK3 71 363 IPR039192 -
Vvi14g1619 409 Gene3D Transferase(Phosphotransferase) domain 1 156 390 - -
Vvi14g1619 409 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 40 385 - -
Vvi14g1619 409 FunFam Glycogen synthase kinase-3 beta 60 155 - -
Vvi14g1619 409 Gene3D Phosphorylase Kinase; domain 1 60 155 - -
Vvi14g1619 409 SUPERFAMILY Protein kinase-like (PK-like) 75 396 IPR011009 -
Vvi14g1619 409 Pfam Protein kinase domain 76 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g1619 409 SMART serkin_6 76 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1619 Vvi-Chr14 27493565 27497699 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1619 82 368 Core Cell Cycle Gene Families AT1G76540 34.576 4.61e-56 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vvi14g1619 Pkinase 2e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1619 - - vvi:100261256 791.186