Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1616 ATGGCTGCAACCGCAACTGGTCCACGTTATGCACCAGAAGACCCTACTCTTCCCAAACCGTGGAAAGGCCTGGTTGATGGGAAAACAGGGTATCTTTACTTTTGGAATCCAGAGACCAATGTAACCCAGTATGAGAGGCCTGAGAGGCCTGGTGCTTCTTCAAATGCAAGTTTAGCACCACCTCCAAAGTCTTCAGCATCCATAAGTTCTTCAGTTCAAGTTCAACAATCTTCTCAAGGACAGCGTCGTGACCATGGTCTGAATGAAGAAGATGATAAGTATAACAGAGCAAGGAATCTTCAGAGTGCCAGAGGTGGGACAGTTCATTCTCATGATCCACCTAATGGGATTGTTGGTGCTGGACATGGAGGGTCTTCTGTTAGAGGACAAGGATCCTCAGGCCCAGGGAGTGGTGCATCAACAGAGTCCTATCGCCGTCGGCATGAAATAACAGTTACAGGAGATGATGTTCCCCAACCTTTCACATCATTTGAATCTACGGGCTTTCCTCCAGAGATTATTAGAGAGGTATACAGTGCTGGGTTCTCTGCCCCTACTCCAATTCAGGCACAGTCTTGGCCAGTTGCTCTTCAAAGTCGTGATATAGTGGCCATTGCTAAGACGGGTTCAGGGAAAACACTGGGCTACCTAATTCCTGGCTTTATTCATCTCAAACGCATCCGCAATAATCCCCAAATGGGTCCAACTGTTTTGGTACTCTCACCAACTAGGGAGTTGGCAACACAGATACAAGATGAAGCTGTGAAGTTTGGAAGATCATCAAGACTTTCATGCACATGTTTGTATGGAGGAGCACCAAAGGGTCCCCAGTTGAGAGATCTAGACAGAGGAGCAGATATCGTGGTTGCTACTCCTGGCCGCTTGAATGATATTCTGGAAATGAGAAGAGTCAGCCTCCGTCAAGTGTCTTATCTGGTGCTGGACGAGGCAGACCGAATGCTGGACATGGGTTTTGAACCTCAGATTCGAAAGATTGTGAAAGAGGTACCCGCTCGCCGGCAGACTCTCATGTACACTGCAACATGGCCGAAGGAGGTTCGGAAGATTGCAGCAGATCTACTAGTTAATCCTGTTCAGGTTAACATTGGGAATGTTGATGAGCTTGTTGCAAACAAGGCGATCACTCAGTATGTTGAAGTATTGCCATATATGGAGAAACACAAGCGGTTGGAGCAGATATTGCGCTCTCAAGAACCAGGATCCAAGATTATCATTTTCTGTTCAACTAAGAAGATGTGTGATCAACTGGCTCGGAACCTAACCCGCCCCTTTGGAGCTGCTGCCATTCATGGAGACAAATCTCAAGGTGAGAGGGATTATGTATTGAATCAGTTCCGCACTGGGAGGTCCCCGGTACTTGTGGCCACCGATGTTGCAGCTCGAGGACTTGACATTAAGGATATCAGGGTGGTTATCAACTATGATTTCCCAACTGGAGTAGAGGATTATGTGCACAGGATTGGAAGGACTGGTAGGGCAGGTGCCACTGGAGTTGCTTACACATTCTTTGCAGAGCAGGATGCAAAGTATGCTTCAGATCTTGTCAAAGTTCTAGAAGGGGCAAACCAGCGAGTCCCTCCGGAGATTCGTGATATGGCTTCACGTGGTGGTGGGATGGGCAGGTCTAGGCGTTGGGGCTCTGGTACTGGTGGTCGTGATGGAGGCCGTGGTGGACGAAATGATTCAAGTTATGGTGGTAGGGATGGTGGAAGGGGTGGCTGGGGAATGGCTCCATCATCTTCCAGTAGGTTGGAAAGAGGTGGGGGCCGGGGAGCTGACCAAGATCAACGTGACAGGGACAGGTACGACCACAGTTATCATGATGGGCATGATTTTGATACTCGTTCAAGGTATGATAGGGGCTACCATGCAAGTAGTATCCGGGCTGGAGAAAGGGATAGAGCTCGTAGCCGAAGTAGAAGTCAGAGCCCCAACAAGGGGCAGGCTTATGGTGATGCCCGGAGCAGGAGCCGCAGTCGAAGCAAGTCTCGCAGCCGGAGTCGTAGCCTTGAAAGATACAACAAGGCTCCACCTGTACGTGAACGGTCCCCAGTGCACAGTTTTCATAAATCAGCCATGGAGCAGGCTCGTTCACCGCATGGTCGATATGTTTCACCTTACAACAATGACAATGTTCGGGAACGCTCTCCCATGCGCAGTTTCCATAAATCAGCCATGGAGCAGAAGCCTCAGTCATCACCACCACCACAGCGGCAGCGTGTTTCACCTTACAACAAAGATGGTACAAGGGGTTTCACAAATTCTGTGAATGCACGTGGTTCTTCCCCAGAGAGATCACAGTCCCCACCTGGTGCTGCTGGTGTAGGGAAGGAAAAGTTGAAGGCTTCTGATGGTGATGGTGGCGGGAAGGATAAGCTCAGGGCACCATATGATGATACTCCACAGGACTGGCAAAGATCACCAGGTGGTGGGCAGGATGTTGTAGGTTACGCCAATGGCCATCGAGCTTCTTATTTTGGTGAAGAAGAAGAGGAAGGCATGATTCCAGCTGATGACGATGGAACATTTCAAGCACCTACTGCAGACCCCCATCAGGCATCTCCTTAA 2589 0.4948 MAATATGPRYAPEDPTLPKPWKGLVDGKTGYLYFWNPETNVTQYERPERPGASSNASLAPPPKSSASISSSVQVQQSSQGQRRDHGLNEEDDKYNRARNLQSARGGTVHSHDPPNGIVGAGHGGSSVRGQGSSGPGSGASTESYRRRHEITVTGDDVPQPFTSFESTGFPPEIIREVYSAGFSAPTPIQAQSWPVALQSRDIVAIAKTGSGKTLGYLIPGFIHLKRIRNNPQMGPTVLVLSPTRELATQIQDEAVKFGRSSRLSCTCLYGGAPKGPQLRDLDRGADIVVATPGRLNDILEMRRVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKAITQYVEVLPYMEKHKRLEQILRSQEPGSKIIIFCSTKKMCDQLARNLTRPFGAAAIHGDKSQGERDYVLNQFRTGRSPVLVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFAEQDAKYASDLVKVLEGANQRVPPEIRDMASRGGGMGRSRRWGSGTGGRDGGRGGRNDSSYGGRDGGRGGWGMAPSSSSRLERGGGRGADQDQRDRDRYDHSYHDGHDFDTRSRYDRGYHASSIRAGERDRARSRSRSQSPNKGQAYGDARSRSRSRSKSRSRSRSLERYNKAPPVRERSPVHSFHKSAMEQARSPHGRYVSPYNNDNVRERSPMRSFHKSAMEQKPQSSPPPQRQRVSPYNKDGTRGFTNSVNARGSSPERSQSPPGAAGVGKEKLKASDGDGGGKDKLRAPYDDTPQDWQRSPGGGQDVVGYANGHRASYFGEEEEEGMIPADDDGTFQAPTADPHQASP* 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1616 862 MobiDBLite consensus disorder prediction 126 140 - -
Vvi14g1616 862 MobiDBLite consensus disorder prediction 83 98 - -
Vvi14g1616 862 Pfam Helicase conserved C-terminal domain 393 501 IPR001650 -
Vvi14g1616 862 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 122 540 - -
Vvi14g1616 862 SMART ultradead3 181 384 IPR014001 -
Vvi14g1616 862 Pfam WW domain 17 47 IPR001202 GO:0005515
Vvi14g1616 862 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 193 367 IPR014001 -
Vvi14g1616 862 Gene3D - 12 58 - -
Vvi14g1616 862 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 162 190 IPR014014 GO:0003724
Vvi14g1616 862 FunFam probable ATP-dependent RNA helicase DDX17 136 370 - -
Vvi14g1616 862 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 313 321 IPR000629 -
Vvi14g1616 862 CDD SF2_C_DEAD 381 510 - -
Vvi14g1616 862 SUPERFAMILY WW domain 9 50 IPR036020 GO:0005515
Vvi14g1616 862 MobiDBLite consensus disorder prediction 1 23 - -
Vvi14g1616 862 SMART helicmild6 421 501 IPR001650 -
Vvi14g1616 862 SMART ww_5 16 49 IPR001202 GO:0005515
Vvi14g1616 862 MobiDBLite consensus disorder prediction 660 703 - -
Vvi14g1616 862 FunFam ATP-dependent RNA helicase RhlB 371 543 - -
Vvi14g1616 862 MobiDBLite consensus disorder prediction 732 775 - -
Vvi14g1616 862 MobiDBLite consensus disorder prediction 43 144 - -
Vvi14g1616 862 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 396 540 IPR001650 -
Vvi14g1616 862 Gene3D - 372 543 IPR027417 -
Vvi14g1616 862 CDD WW 18 48 IPR001202 GO:0005515
Vvi14g1616 862 Pfam DEAD/DEAH box helicase 186 356 IPR011545 GO:0003676|GO:0005524
Vvi14g1616 862 ProSiteProfiles WW/rsp5/WWP domain profile. 15 49 IPR001202 GO:0005515
Vvi14g1616 862 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 234 517 IPR027417 -
Vvi14g1616 862 MobiDBLite consensus disorder prediction 57 82 - -
Vvi14g1616 862 MobiDBLite consensus disorder prediction 533 862 - -
Vvi14g1616 862 ProSitePatterns WW/rsp5/WWP domain signature. 21 47 IPR001202 GO:0005515
Vvi14g1616 862 Gene3D - 137 371 IPR027417 -
Vvi14g1616 862 MobiDBLite consensus disorder prediction 786 806 - -
Vvi14g1616 862 MobiDBLite consensus disorder prediction 595 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1616 Vvi-Chr14 27450750 27456749 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1616 159 539 Eukaryotic Initiation Factors Gene Family AT3G19760 34.293 1.04e-67 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1616 K12823 - vvi:100264477 1488.78