Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1615 ATGGCGCTTGATACCAGCTCCAAACACAAATTTTCTAACCTTCCAAACACCTTCCTGGAAAATCCGATCAAACCCCACCTGAGAAACGGGTTTTCCATTGGAGGGTCTTCTTCTAAACTCCTTTCTCAACATAATTCTCACCATTTAATTGGCAACAGCCACTTCAACATTGAGGGCTCTTCCATGAATCCCTTTTCTGGGCTCCAGAATCCGCTCTTGAATCGGTATGAATCTCTGCACCACCACAGCTCCGGAGATACCAGTACTTATGGCGCCATGGGGGCTGCGCCGCCTGCTGCGACTGGTGCAACTGGGGTGGTGAAAGAACTTCAGAGTAAAGGGCTTCTGAATTGTTCTCAAGGAATGAACCAGGCATACTGGCCCACGATTTTTGAGGAATCGGGCAACACCAGTTTAGTAGAGGATTTCTGGTGCATCACTCCTGGGAATGGGTATGAAAAGAAGGTTGATCTGAAGAAGAAGAAGAAGAGGAGGGTGCAGAAAAGAAAAGCAAGCAAACTCCGTAAGAAATTGAATGTAGTGAAAGGGCAATGGACTCCCCAAGAAGACTGCTTGTTGATTCAGATGGTGCTGAACTATGGAGAGAAGAAATGGTCTGAAATTGCTAAGCATCTCAATGGTAGGGTAGGGAAGCAATGCAGGGAGAGATGGCACAACCATTTGAGGCCCAATATTAAGAAGGATCCGTGGACCGAGGAAGAGGACAGGATTCTCATACAAGCTCATATAGAAATAGGTAACAGGTGGGCCGAGATTTCAAAGAGGCTGCCGGGAAGAACTGAGAATACCATCAAGAACCATTGGAATGCTACCAAAAGAAGGCATTTGTCGGCTCGGAGTTGCAATGGTCCGAAGAGCAGCCTCTTGCAGAACTATGTGAAGCAAGTCTTTTCATTGCCTGGCGCTACTGATCATTACGAGCCAAATGTTCACTCGGAACCCAACATATCAGTGCCTAATGCCATGAACAATCAGCAAGTGCGGCAGCAAGGGAGCTCATCACAGTACTGGGCAGAGGAGCAGCTCGTCCCTACCTGCTACAACGGAGCCATTGATGCCTCTTTTGATGCAAAAACATTCTGGGAAAACTGCGGTTTGGTGAATTGCAACTCTTCTGAGAGCTATAGTACTATTGGGTCTTTGCTTGAAGAGACGCCTACTGGTAACTCTATGATTGCTGAGGGCGCTATAATGGGGCTTGAGATGCCTGTGGATATGGATACTCTGATGCAGTTTGGGGTGAATAAGGAGGTCAGCTTGCTGGAAACCATTGCCAACTTAAACCTGTAA 1311 0.4714 MALDTSSKHKFSNLPNTFLENPIKPHLRNGFSIGGSSSKLLSQHNSHHLIGNSHFNIEGSSMNPFSGLQNPLLNRYESLHHHSSGDTSTYGAMGAAPPAATGATGVVKELQSKGLLNCSQGMNQAYWPTIFEESGNTSLVEDFWCITPGNGYEKKVDLKKKKKRRVQKRKASKLRKKLNVVKGQWTPQEDCLLIQMVLNYGEKKWSEIAKHLNGRVGKQCRERWHNHLRPNIKKDPWTEEEDRILIQAHIEIGNRWAEISKRLPGRTENTIKNHWNATKRRHLSARSCNGPKSSLLQNYVKQVFSLPGATDHYEPNVHSEPNISVPNAMNNQQVRQQGSSSQYWAEEQLVPTCYNGAIDASFDAKTFWENCGLVNCNSSESYSTIGSLLEETPTGNSMIAEGAIMGLEMPVDMDTLMQFGVNKEVSLLETIANLNL* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1615 436 FunFam Transcriptional activator Myb isoform A 181 234 - -
Vvi14g1615 436 PANTHER MYB PROTEIN-RELATED 160 330 - -
Vvi14g1615 436 Gene3D - 181 233 - -
Vvi14g1615 436 ProSiteProfiles Myb-like domain profile. 177 228 IPR001005 -
Vvi14g1615 436 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 233 283 IPR017930 -
Vvi14g1615 436 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 177 232 IPR017930 -
Vvi14g1615 436 ProSiteProfiles Myb-like domain profile. 229 279 IPR001005 -
Vvi14g1615 436 CDD SANT 236 279 IPR001005 -
Vvi14g1615 436 Gene3D - 236 297 - -
Vvi14g1615 436 Pfam Myb-like DNA-binding domain 185 242 - -
Vvi14g1615 436 CDD SANT 185 228 IPR001005 -
Vvi14g1615 436 SUPERFAMILY Homeodomain-like 179 275 IPR009057 -
Vvi14g1615 436 SMART sant 181 230 IPR001005 -
Vvi14g1615 436 SMART sant 233 281 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1615 Vvi-Chr14 27443804 27447236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1615 126 393 MYB Transcription Factor Family AT4G18770 41.343 9.05e-59 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi14g1615 Myb_DNA-bind_6 1.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1615 K09422 - vvi:100852914 870.922