Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1606 ATGCCTTCCTCGATCAAAGTTCACTCTAAACCCACATGGCTGATCTCCTTCTTCATCCTCTTCTCTCTGTCCTCCTCCGATCCCAGAACCTCCGAAGCTGGGCTCTACTGCAGCCCAGCCAAGTCAACGGACAAAAACTTTGTCCCCGTATTTGTAAAAGAAATGGAGTTTCTATCACAGCTCGTCACCCTCAACCTATGGGGTTCTCATTTTGTGAACTCGACACCACCCATGTACGGCTTGGCCCAGTGCCATCAGGACCTTTCTCACCTTGATTGCCTCCTATGCTATGCCGCCGGCCGCACCAAGCTCCCCCGATGCCTCCCTGCCACCTCTGCCCGTATCTACCTTGATGGGTGCTTCCTGCGCTACGACAACTATAGCTTTTTCAGCGAATCTGTGGACCCAGATCATGACACCGTGAACTGCAGTTCTGGGAGTGGGGCGATTGTGGATCAGGTTGCAAAGTTAGAGTTTGTCAAGAATGTTCATCGAGTGATCAATAATGTGACCGCCACTGCAGTAGCGAATGGTGGGTATGGTGTGGCAGTGGTGGAGGGAGGAGCGGTGGGAGTGTATGCTTTGGCAGAGTGTTGGAAGACAGTTAACAGTAGTGGATGCAGAGCTTGCTTGCAGAAGGCAAGCAATGAAGTGAGAGGGTGTCTTCCAGGAAAGGAAGGGAGAGGGTTGAATGCTGGCTGCTACTTGAGGTATTCAACTGAAAAATTCTATGATAATGGAGGGGAATCAGAGGGTGGTAGTGGGTCTTCAAGAACAGGGCTCACCATAGCCATCGTTTTAGCTGCAGCAGCGTTAATCCTGGTCTCTCTCTTTGCTGCCTATGCAGGATATGCAAGTTTATCCAAGATAAAAGAAGAACGCAAAAATCTCGGAAAGGTTGCATCTATTATCAACAAGTCTAGTTTGAATTTCAAATACGAAACACTTGAGAGGGCAACAGAGTACTTTAATCCATCAAGGAAATTAGGCCAAGGGGGAGCTGGTTCTGTGTACATGGGGACTCTCCCAAATGGAGAAATTGTAGCTGTCAAGAGGCTAATTTTCAACACCAGGCAATGGGTAGATGAGTTCTTCAATGAGGTAAACTTGATCAGTGGCATTCAACACAAAAACCTTGTGAAGCTTTTGGGATGTAGCATTGAAGGCCCTGAGAGCCTCCTGGTTTATGAATATGTACCCAACAGGAGCCTTGATCAGTTCATGTTTGATAAGAACAAGATTCAAACCTTGAATTGGGAGCAGAGGTTTGATATAATAGTAGGAACAGCTGAAGGGCTTGCATACCTTCATGGCGGTTTGCAGATGCGAATAATCCACAGGGACATAAAAGGCAGCAACATTCTTCTTGATGAGAATCTAACTCCAAAGATTGCCGATTTTGGACTTGCTCGGTGTTTAGGGGCTGATAAGACTCATCTTAGCACAGGCATTGCAGGAACACTAGGGTATATGGCTCCTGAATATCTTGTTCGAGGACAACTTACAGAGAAAGCAGATGTTTATAGTTTTGGTGTACTTGTTCTTGAGATTGTATGTGGTAGGAAGAACAGTGTCTTCACACAGGACTCTGGTTCTCTTCTACAAAGAGTTTGGAAGTTATACAAGTCAAATAAATTGGTTGAAGCTATTGATGATTGCCTGAAAGATGATTTTCCAGAAAAGGAGGCATCTGATGTGCTCCGAATTGGGCTTTTATGTACACAAGCTTCAGTTGCTTTAAGACCTTCCATGACTGAAGTGGTTTGGATGCTAACTCATAAAGATTGGGAGATTCCTCCACCAAATCAACCTCCTTTCCTGAATGCTCATGTGCTGGAGTCAGCTATCTCCAGGTCTAATAGTGCAAACACTTCAATGTCAAATATGGCAACAAAGATTGAAGTGTCCGGCCCTTTTACAGAGTCCTCCAGCATGCACAGTTCCATGGACCATCAAGAAGAACAGAAACTGATGCAGTAG 1980 0.4576 MPSSIKVHSKPTWLISFFILFSLSSSDPRTSEAGLYCSPAKSTDKNFVPVFVKEMEFLSQLVTLNLWGSHFVNSTPPMYGLAQCHQDLSHLDCLLCYAAGRTKLPRCLPATSARIYLDGCFLRYDNYSFFSESVDPDHDTVNCSSGSGAIVDQVAKLEFVKNVHRVINNVTATAVANGGYGVAVVEGGAVGVYALAECWKTVNSSGCRACLQKASNEVRGCLPGKEGRGLNAGCYLRYSTEKFYDNGGESEGGSGSSRTGLTIAIVLAAAALILVSLFAAYAGYASLSKIKEERKNLGKVASIINKSSLNFKYETLERATEYFNPSRKLGQGGAGSVYMGTLPNGEIVAVKRLIFNTRQWVDEFFNEVNLISGIQHKNLVKLLGCSIEGPESLLVYEYVPNRSLDQFMFDKNKIQTLNWEQRFDIIVGTAEGLAYLHGGLQMRIIHRDIKGSNILLDENLTPKIADFGLARCLGADKTHLSTGIAGTLGYMAPEYLVRGQLTEKADVYSFGVLVLEIVCGRKNSVFTQDSGSLLQRVWKLYKSNKLVEAIDDCLKDDFPEKEASDVLRIGLLCTQASVALRPSMTEVVWMLTHKDWEIPPPNQPPFLNAHVLESAISRSNSANTSMSNMATKIEVSGPFTESSSMHSSMDHQEEQKLMQ* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1606 659 CDD STKc_IRAK 329 592 - -
Vvi14g1606 659 Pfam Salt stress response/antifungal 155 240 IPR002902 -
Vvi14g1606 659 Pfam Salt stress response/antifungal 75 127 IPR002902 -
Vvi14g1606 659 Pfam Protein tyrosine and serine/threonine kinase 326 589 IPR001245 GO:0004672|GO:0006468
Vvi14g1606 659 FunFam Cysteine-rich receptor-like protein kinase 2 290 398 - -
Vvi14g1606 659 SUPERFAMILY Protein kinase-like (PK-like) 309 625 IPR011009 -
Vvi14g1606 659 Gene3D - 145 243 IPR038408 -
Vvi14g1606 659 Gene3D - 63 129 IPR038408 -
Vvi14g1606 659 FunFam Cysteine-rich receptor-like protein kinase 42 55 129 - -
Vvi14g1606 659 ProSiteProfiles Gnk2-homologous domain profile. 29 129 IPR002902 -
Vvi14g1606 659 SMART serkin_6 323 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g1606 659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 444 456 IPR008271 GO:0004672|GO:0006468
Vvi14g1606 659 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 78 624 - -
Vvi14g1606 659 FunFam Cysteine-rich receptor-like protein kinase 3 142 243 - -
Vvi14g1606 659 Gene3D Transferase(Phosphotransferase) domain 1 399 598 - -
Vvi14g1606 659 ProSiteProfiles Protein kinase domain profile. 323 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g1606 659 FunFam Cysteine-rich receptor-like protein kinase 2 399 598 - -
Vvi14g1606 659 MobiDBLite consensus disorder prediction 637 659 - -
Vvi14g1606 659 ProSiteProfiles Gnk2-homologous domain profile. 138 243 IPR002902 -
Vvi14g1606 659 Gene3D Phosphorylase Kinase; domain 1 284 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1606 Vvi-Chr14 27361230 27364368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1606 16 488 Receptor kinase-like Gene Family AT5G40380 56.184 0.0 543
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi14g1606 PK_Tyr_Ser-Thr 5.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1606 - - vvi:100268147 1236.09