Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1584 ATGGCTTCTTCCAGCTACTCCAACTCACCTTGCGCTGCCTGCAAGCTCTTAAGGAGAAAATGCATGCCGGGTTGTATTTTTGCACCATATTTCCCACCTGAAGAGCCTCAGAAATTCATCAATGTTCACAAGATATTCGGTGCAAGCAATGTCAGTAAACTTCTCAATGAAATTCTCCCCCATCAGAGGGAAGATGCAGTGAACTCTCTTGCCTATGAAGCTGAGGCAAGGATGAAAGACCCAGTCTACGGCTGTGTTGGAGCAATCTCAGTCCTCCAAAGACAAGTTCTTCGTCTCCAAAAGGAACTAGATGCCACCAATGCTGACCTGATCCGCTTCACCTGCAATGACATGTCTTCTTCACTGTCAGGGCCAGGTTCTTCCCAGTTTGGAAGACGAATGAGTCATGGAGGTGGAGGTGGAGGTGCTTCTTTTAATCAGAATTCTGGTTTGCCTCCTCCTTATCCTTCTCCATGGGATAACAACCCTTCAGGAGACAGCCATGAGAGTTGA 513 0.4737 MASSSYSNSPCAACKLLRRKCMPGCIFAPYFPPEEPQKFINVHKIFGASNVSKLLNEILPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVLRLQKELDATNADLIRFTCNDMSSSLSGPGSSQFGRRMSHGGGGGGASFNQNSGLPPPYPSPWDNNPSGDSHES* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1584 170 Coils Coil 89 109 - -
Vvi14g1584 170 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Vvi14g1584 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 116 - -
Vvi14g1584 170 MobiDBLite consensus disorder prediction 120 170 - -
Vvi14g1584 170 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1584 Vvi-Chr14 27157126 27157638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1584 1 124 AS2 family AT5G63090 81.600 1.36e-68 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi14g1584 LOB 9.2e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1584 - - vvi:100243933 337.421