Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1571 ATGATATTACGCAATTTTCTCCAGGGTGCAGGTGCATTGATTCATTTACTAACTTTATCATGGCCTCTTGCATTATCAACAATTGTGATATGCTCTGTTCTATCTGCAATCTTTCTGGTTTATGGCCAGTACAGAAGGAAAGCAGCGATGTTTACCCAAGAGTTCACTGCTTGTGCCAATGAAGTAGCACAAGAAACATTTTCTTTGATGAGAACCGTCCGAACTTATGGAACAGAGGAAAACGAACTTAGAAGGTACAAGCAATGGCTGGATAAATTAGCTTTTGTTAGCATCCGAGAAAGTGTGGCTTATGGATTCTGGGGTCTGAGTTTCAACACTCTATACCGTTCAACACAGGTCATTGCTGTGCTGTTAGGAGGAATGTCTATTCTTACTGGTCACGTGACACCCGAACAACTTACGAAGTATATATTATACTGTGAGTGGTTGATTTATGGTACTTTGAGGCTTGGAGACAATTTTGCATCATTACTGCAGTCTGTTGGCGCAAGTGGAAAGGTGTTCCAGTTAATGGACCTCTTGCCTAGTGATCAATTCAAATCAGAAGGAGTAAAATTGAAGAGGCTAATGGGACATATTGAGTTTGCAAATGTGTCTTTTTACTATCCATCAAGGGTCATGGTACCTGTTCTGGAACATGTAAACATTTCTGTACAAGCTAATGAAGTGGTTGCAATTGTTGGCATTAGTGGTAGCGGAAAAAGCTCATTAGTCAATCTTTTGCTTCGTCTATACGAGCCAACAACTGGTCAGATTTTAATTGATGGCTTCCCCCTGAGAGAGTTGGACATTGGTTGGCTGAGAGGAAAAATTGGATTTGTTGGACAGGAACCCCATCTTTTTCATATGGATGTCAAGTCAAACATAAGATATGGTTGCTCCAGAGACATAGGACAGGAAGATATAGAATGGGCTGCAAAGCTGGCCTATGCTCATGGATTCATCTCATCTCTTCCTGATGGTTATGATACTATTATAGATGATCATCTACTCAGTGGGGGACAAAAGCAGCGGATTGCAATTGCCAGGGCCATTCTTAGGGGTCCTGCTATTCTGATCCTTGATGAAGCCACTAGTGCTCTTGATGCAGAAAGCGAACACTATGTCGAGGGGGTTCTTCATGCCTTCAGAAATGATGCTAATGCAAAAAGAACTGTTATTGTCATAGCGCATAGGCTATCCACAGTAAAAGCTGCTGACAGAATTGTAGTGATGGATGGTGGTTCCGTCATTGAGGTGGGTGATCACCAACAACTGCTTCTCAAAGATGGGTTGTATGCAAAGTTGATCAAAACACAAACAGATGCCTTGGCTTGA 1338 0.4185 MILRNFLQGAGALIHLLTLSWPLALSTIVICSVLSAIFLVYGQYRRKAAMFTQEFTACANEVAQETFSLMRTVRTYGTEENELRRYKQWLDKLAFVSIRESVAYGFWGLSFNTLYRSTQVIAVLLGGMSILTGHVTPEQLTKYILYCEWLIYGTLRLGDNFASLLQSVGASGKVFQLMDLLPSDQFKSEGVKLKRLMGHIEFANVSFYYPSRVMVPVLEHVNISVQANEVVAIVGISGSGKSSLVNLLLRLYEPTTGQILIDGFPLRELDIGWLRGKIGFVGQEPHLFHMDVKSNIRYGCSRDIGQEDIEWAAKLAYAHGFISSLPDGYDTIIDDHLLSGGQKQRIAIARAILRGPAILILDEATSALDAESEHYVEGVLHAFRNDANAKRTVIVIAHRLSTVKAADRIVVMDGGSVIEVGDHQQLLLKDGLYAKLIKTQTDALA* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1571 445 ProSitePatterns ABC transporters family signature. 338 352 IPR017871 GO:0005524|GO:0016887
Vvi14g1571 445 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 2 166 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi14g1571 445 FunFam Multidrug ABC transporter ATP-binding protein 192 444 - -
Vvi14g1571 445 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 440 IPR027417 -
Vvi14g1571 445 Pfam ABC transporter 218 366 IPR003439 GO:0005524
Vvi14g1571 445 Gene3D ABC transporter type 1, transmembrane domain 2 197 IPR036640 GO:0005524|GO:0016020
Vvi14g1571 445 SMART AAA_5 227 416 IPR003593 GO:0016887
Vvi14g1571 445 PANTHER ABC TRANSPORTER B FAMILY 1 439 IPR039421 -
Vvi14g1571 445 Gene3D - 198 441 IPR027417 -
Vvi14g1571 445 Pfam ABC transporter transmembrane region 1 148 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi14g1571 445 SUPERFAMILY ABC transporter transmembrane region 1 184 IPR036640 GO:0005524|GO:0016020
Vvi14g1571 445 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 200 439 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1571 Vvi-Chr14 27052060 27059451 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1571 17 443 Calmodulin-binding Proteins AT2G36910 39.080 8.32e-78 261