Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1567 ATGGACTCACAGCCCACTGAGGCCATTCTTGATGGAGAAACTAACGACGTTAAATCCTCTCACCACACTGATGATAATGACTCCAAGCCTCACCCTCATACGGGTGACGGAGCCAGCCCTGGGAAGATTTTTATTGGAGGCTTGGCAAGAGAGACGACTTCTGCACAATTTATCAAGCATTTTGGTAAATATGGTGAAATTACGGATTCTGTGATAATGAAGGATCGGAAAACTGGACAACCTCGTGGGTTTGGGTTCGTGACTTACGCAGACCTGTCTGTGGTTGACCAAGTCATCCAAGACACCCATGTCATTAATGGGAAACAAGTAGAAATCAAGCGGACCATACCAAAGGGAGCCATTGGTGCTAAGGATTTCAAAACTAAAAAGATCTTTGTGGGTGGAATTCCAGCAACAGTGACTGAAGAGGAGTTCAAGGACTTCTTCACACAATATGGAGAGGTTAAGGACCACCAGATTATGCGAGATCATTCCACCAGTCGTTCACGTGGTTTTGGATTTGTTACATTTGACACAGAGCAAGCTGTGGATGATCTCTTGTCCCAGGGGAACAAGCTTGAGCTGGCTGGAGCTCAGGTGGAGATCAAGAAAGCAGAACCAAAGAAGCCAAACCCACCAGTGCCCCCATCCAGGCGATATTCGGATTCTAGACCTGGCTTTGGTGGGGGCTTTGGAGATGCTTATGCTGGCTTTGGAGGCAGCAGTTTTGGTAATGGTCCTTATAGGTCAGGTGGGGCCTATGGGAGTAGAGCCAGTGCCTATGCGGGATATGGTGGAAGTGAATTTGGCGGATATGGAGGATATGGTGGTGGCGGCAGCAGCGGCGGCGGCGGCGGCATAGGAACTTACAGAGGAGAACCCCCATCATTAGGGTACTCAGGTCGTTATGGGGGAAGCTTCAATAGAGGTTACGATCTGGGAGGTAGCCATGGTGGGCCTAGCGAGGGCTATGGGGCATATGGCGGTGGAGCTGGCAGCGGCTATGGAGGTGGCTATGATGCCAGCATTGGTGGTGGCTATGGAGGTAGCAGTGGAGGTCCCTTCTATGGAAGTAGAGGGGGTTATGGTGGTGGAGGGAGTAGTGGCCGGTATCATCCCTATGGAAGGTAG 1131 0.5066 MDSQPTEAILDGETNDVKSSHHTDDNDSKPHPHTGDGASPGKIFIGGLARETTSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADLSVVDQVIQDTHVINGKQVEIKRTIPKGAIGAKDFKTKKIFVGGIPATVTEEEFKDFFTQYGEVKDHQIMRDHSTSRSRGFGFVTFDTEQAVDDLLSQGNKLELAGAQVEIKKAEPKKPNPPVPPSRRYSDSRPGFGGGFGDAYAGFGGSSFGNGPYRSGGAYGSRASAYAGYGGSEFGGYGGYGGGGSSGGGGGIGTYRGEPPSLGYSGRYGGSFNRGYDLGGSHGGPSEGYGAYGGGAGSGYGGGYDASIGGGYGGSSGGPFYGSRGGYGGGGSSGRYHPYGR* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1567 376 SUPERFAMILY RNA-binding domain, RBD 125 235 IPR035979 GO:0003676
Vvi14g1567 376 MobiDBLite consensus disorder prediction 1 42 - -
Vvi14g1567 376 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 19 376 - -
Vvi14g1567 376 FunFam Heterogeneous nuclear ribonucleoprotein 1 40 121 - -
Vvi14g1567 376 SUPERFAMILY RNA-binding domain, RBD 36 119 IPR035979 GO:0003676
Vvi14g1567 376 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 129 207 IPR000504 GO:0003723
Vvi14g1567 376 Gene3D - 41 120 IPR012677 -
Vvi14g1567 376 MobiDBLite consensus disorder prediction 14 32 - -
Vvi14g1567 376 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 117 IPR000504 GO:0003723
Vvi14g1567 376 SMART rrm1_1 42 113 IPR000504 GO:0003723
Vvi14g1567 376 SMART rrm1_1 130 203 IPR000504 GO:0003723
Vvi14g1567 376 MobiDBLite consensus disorder prediction 201 226 - -
Vvi14g1567 376 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 110 IPR000504 GO:0003723
Vvi14g1567 376 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 131 199 IPR000504 GO:0003723
Vvi14g1567 376 Gene3D - 121 237 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1567 Vvi-Chr14 26972580 26977254 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1567 43 240 Eukaryotic Initiation Factors Gene Family AT2G23350 25.346 6.75e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1567 K12741 K14314 vvi:100257580 432.95