Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1563 ATGGAGGAGGAAGTGGTGGATGCTCTGCTGAATGGCGATAGAGAAACTCAGATTAGAGCAGCCACTGATCTGGGTGGATTGATTGGTAGGCAGAGGCACAAGTTGGCTGAGAAAGGAGTGGTTCCTCCTCTGCTTTCCATGCTTCATTCTCAAGATTTTGAGGCTGTTGAGGCTGCTCTCTTTGCTCTCCTCAGACTCGCCTCTGGAAGTGAAAGGAACAAAGTTCGCATTGCAAAGGCTGGGGCCATACCAGTGTTGTTAAGCCTCCTCCAATGCCAAAGTGAGGTGCTGATGGATCTCGCCATGGCTGCACTCTTGATCCTCTCTTCTTGCAGAGCAAACAAGCTAGTGATTGCTGCTTCTGGGGCTATTCAAATTCTAGTTGAAATGCTCAGTGGAGACAACACCGGAGGCGATAACAATGGTAGCAGCATGAGTATGCAGGCCAAACTCGATGCCATATCCACATTCCAAAACCTCTCAACTTGCCATGAGATCATTCCATTAGTTGTGTCTTCAGGTGCTGTGTTTTCGCTGCTTCAACTACTCTGTGGCTGTGACAAATCATCGGAGTTGGTCCAGAAGGTGATATCGCTGCTAGAAACGATGGCCTCCTGGTCAGAGATTGCAGTTGAGGAAGTGGCTGGGACGGGTGGTGCGATTCAGGCACTGGTTGAGACAGTAGAGGAGGGGAGTCCACAGTGCCAAGAGCATGCTGTGGGAATTCTGCTGCTCATATGCAAGAGCTGCAGAGAGAAATACAGAGGATTGATTTTGAGGGAAGGAATCATGCCAGGGCTGCTTCAGTTGAGTGTACACGGCACGTGGAGGGCTAAGGACATGGCTCAAGACTTGTTGCTTCTTCTGAGGGAATGCCCAAACTATGGTTCAAGAAAGAAACAATTGAAGAATGAGCATTTGGAGCAGATTATGAAAGAGATCGATGCAGAAGGAGAGGAAGTTGCTGGGACAGCATTGAGGATGGTGGAGGAGATGATTGCCAAGCTCAATGTATGA 1017 0.4897 MEEEVVDALLNGDRETQIRAATDLGGLIGRQRHKLAEKGVVPPLLSMLHSQDFEAVEAALFALLRLASGSERNKVRIAKAGAIPVLLSLLQCQSEVLMDLAMAALLILSSCRANKLVIAASGAIQILVEMLSGDNTGGDNNGSSMSMQAKLDAISTFQNLSTCHEIIPLVVSSGAVFSLLQLLCGCDKSSELVQKVISLLETMASWSEIAVEEVAGTGGAIQALVETVEEGSPQCQEHAVGILLLICKSCREKYRGLILREGIMPGLLQLSVHGTWRAKDMAQDLLLLLRECPNYGSRKKQLKNEHLEQIMKEIDAEGEEVAGTALRMVEEMIAKLNV* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1563 338 SMART arm_5 70 110 IPR000225 GO:0005515
Vvi14g1563 338 SMART arm_5 163 205 IPR000225 GO:0005515
Vvi14g1563 338 SMART arm_5 28 68 IPR000225 GO:0005515
Vvi14g1563 338 SMART arm_5 111 162 IPR000225 GO:0005515
Vvi14g1563 338 SMART arm_5 207 248 IPR000225 GO:0005515
Vvi14g1563 338 FunFam U-box domain-containing protein 4 211 329 - -
Vvi14g1563 338 PANTHER U BOX DOMAIN-CONTAINING 5 292 - -
Vvi14g1563 338 Gene3D - 141 334 IPR011989 -
Vvi14g1563 338 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 81 123 IPR000225 GO:0005515
Vvi14g1563 338 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 39 81 IPR000225 GO:0005515
Vvi14g1563 338 SUPERFAMILY ARM repeat 3 329 IPR016024 -
Vvi14g1563 338 Gene3D - 3 140 IPR011989 -
Vvi14g1563 338 FunFam U-box domain-containing protein 4 3 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1563 Vvi-Chr14 26954397 26955677 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1563 4 290 U-box Gene Family AT3G54790 34.708 3.95e-26 107