Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1555 ATGGCTAGGACTTGGGTCGTTGACAGCAGAGGAATAGCAAGGAAAGTGAAAAATGCTACTCAATCCTTTGCCTCTCAAATCAAAGATTGTGGGGCAAATCGTGAATGCCCAAATTGCCATCATCGTATTGATAATAGTGATGTTTCTCATGAATGGCCTGGCCTGCCTGCTGGTGTAAAGTTTGATCCATCTGATGTACAGCTTTTAGAACATCTAGCAGCAAAATGTGGAGTTGGAAATGGAAAACCACATGTACTTATTGATGAATTCATCCCAACACTTGAGGAGGATAAAGGAATCTGCTACACCCATCCAGAGAATCTTCCTGGTGCCAAAAAAGATGGAGGTAGCATCCATTTCTTTCACAGAACTACCAATGCGTATGCTACTGGTCAAAGGAAGCGCCGAAAGATCCACAGTCTTCATGGTTCAACCGAGGAGCATGTTCGCTGGCACAAGACAGGCAAGACCAAGCCTGTGATTGAAAATGGGGTTCAAAAGGGCTGTAAGAAAATCATGGTTCTTTATAAAAGTTCAAAGAAGGGGTCCAAGCCAGATAAGTCTAATTGGGTGATGCATCAATATCATCTTGGCACTGAAGAAGATGAAAGAGAAGATGAATATGTGGTGTCCAAAGTTTTCTATCAGCCACAGAAACAAACAGAGACTAATGATAATATTCCAGTCATTGAAGAATTGGATGCAGTGACATCTCAAACTAGTCCAAGAACCCCCAAAACAACTACTCCAAATCCACCTCGATCAGAGAAATCAGTTTTCTGTGCCAATGCTGGGGATGATAGCACACCCCATGGGTCTGCACAGAAAGCAGAGTTTGTTGGAGAAGCGTCTCATCCAAATCCATCTACTGATCAGATTGAGAACAATATGGAGTATCCCCTATGGCTGGCCGGCGAATCACAGGCCATTGAGGATGCAGATCAGAATGGGCTGCACGACTCACTGTTATGCAAGGAGATCTTTTATCCTGGTGCTCCTCACTATGACACAGGATTAAACCATGGTCCTGTCATTGGCTTTTCTCACAACATGAATGGCATACCTGGAGATCATAATGCACCCTGTGGAATTGCTGACCTTGAGAATCTAGAACTAGATACTCCACCAGATTTTCAGCTTGCAGCACCATTCAGGATGCAGGTGCTATCTCAAAAGTCAAAAGCTTGTGACACAGGAGTAAAGAATGTTGTGTCACGGAGATATGTTCCTTTGAAATGTCTTTCAAGCAATCCGATTCAATCGAGTGCTGGGAGCGAGGACTGCTCTTCATCAATTTCCCCGTGGAATGGATTCAGTGGATGGTCTCGAGCGATGTCCACGGCTGGAGGGAGAAGCATGCGGAGCAAGGTGGAGAGGAGGATGCGTAAAGAGTCTGGAAAAACCCTAAGAGAGGTTCGCCGCGCTCAGAAATTGCGCAAGAAGTTGATGACTGATGAGGAGAGACTCATATACAATCTCAGAAGAGCCAAGAAGAAAGTGGCATTACTGCTGCAGAAGCTCAAGAAATATGAGCTACCAGAGCTTCCTGCCCCTCGACATGATCCTGAGTTATTAACTGCTGAGCAGCTTCAGGCATATAAGAAGATTGGCTTCAGAAATAAAAATTATGTTCCTGTTGGTGTTCGTGGAGTATTTGGAGGAGTGGTCCAAAATATGCATCTTCACTGGAAGTTCCATGAGACTGTTCAAGTTTGCTGTGATAACTTCCCAAAGGAAAAAATCAAGGAGATGGCAACCATGCTTGCAAGATTGAGTGGAGGTATCGTGATAAATGTACATGATGTGAAAACAATTATCATGTTCCGTGGCAGAAACTATCGCCAGCCAAAGAATCTGATACCTATCAACACCCTCACAAAGAGGAAGGCAACTGCTACTAAAAAGGCTAAAGAAGCAGCATTATTCAAAGCCAGATTTGAACAAGCACTTGATTCTCAGAAACTAAACATAAAGAAAATAGAACAACAGCTGCGGCGAATGGGTGTAAACCCTGAGGATCCAGTTGCCATGGCCAGCATCCAGAGAGTAGCATCCACATTCTTCAATGCAATTGACAAGCAGGAAGGAAGTCCTTATGTTTTCCAGGGGGACAAACTATTTGGAGCAGCACCTACTGAAGACTTAAAACTGTCAGAAGAGCCTCCTGTTGATAGCGACCAAGAGGAACTTGACCAATTCATAGCTGAGATAGAGGATGCAGCAGATAAGGAATGGGCAGTGGAAGAAGCTGCCGAGAAAGAAGAGCTCAGCAAAATGAGGTATTGGAACAGAGAAGAGTTTGCTGGGAGGTTTAGAAGATTTGATAACCCTAAAAATGAAGACTTTGATAGTGATGTTAGAGGGGCAAGGGGTTGGAACCATACGCGTGGCAGACAGAGGACAACTGATACTGATGATGAAGGCAATGATGTTTCTGAGGGTGATGAAGAATGGGATTCCAATGATGTGAGAGATCTGAGAACTCCTGAGAGTGATGGTGATGATTCTGATGAAGTTCATAATGAGTTCACGGCACCTAGAATGCAAAGTGGGAAGCTGGATTTTGGCAGAGCCAAAAATAATAATAGTAAGGATTTCAAGAGAAATGCTGAAGAATTTAGGAGAAAGGTAGATGAAGAAGACTCAGGGTCAGAAGATATGTTAGATGATTTGGAAAACGCTATGTGGGAGTCAGATGCCGAGGAAGAACATGACTCGAGGACATCAAGAATGGCAAGTAATGATTACAGGAGCAGCAGTGATGATGATGAGCATCTTCATCGCATAAAAAGAGATAGTAAGAACGCAAGGAATCTGGTGAATGATCATGAGAATGATGCTGATTATTCTGAATCTGATGAAGGTCAGGATGAATTCAGGGAATCTAGAATAGCAAAACAGAAGCATGGTCAGATTAGCCGAGTCAATAATGATCAAGGCTTCATGAGAAATGCTGAAGCTAACTTTAGCAGAAATATGATTGAAGAAGATTCTGAGTCAGAAAATATGTTAAGTGATTCAAAAGTAGGAATGTGGGAATCAGATGATGAGGGATACTCAAAGGTATCCAAAGCAATAAGCAATGATTATCAGAGCGGTGATGAAGAAGAGGATTATCACATAACAAAAAATGAGACGAGCAAGGAGAAAGATAAAAGAATGAAGACACCGAAACAGGTAGATGAGACTTGGGATAGTGATTAG 3204 0.4292 MARTWVVDSRGIARKVKNATQSFASQIKDCGANRECPNCHHRIDNSDVSHEWPGLPAGVKFDPSDVQLLEHLAAKCGVGNGKPHVLIDEFIPTLEEDKGICYTHPENLPGAKKDGGSIHFFHRTTNAYATGQRKRRKIHSLHGSTEEHVRWHKTGKTKPVIENGVQKGCKKIMVLYKSSKKGSKPDKSNWVMHQYHLGTEEDEREDEYVVSKVFYQPQKQTETNDNIPVIEELDAVTSQTSPRTPKTTTPNPPRSEKSVFCANAGDDSTPHGSAQKAEFVGEASHPNPSTDQIENNMEYPLWLAGESQAIEDADQNGLHDSLLCKEIFYPGAPHYDTGLNHGPVIGFSHNMNGIPGDHNAPCGIADLENLELDTPPDFQLAAPFRMQVLSQKSKACDTGVKNVVSRRYVPLKCLSSNPIQSSAGSEDCSSSISPWNGFSGWSRAMSTAGGRSMRSKVERRMRKESGKTLREVRRAQKLRKKLMTDEERLIYNLRRAKKKVALLLQKLKKYELPELPAPRHDPELLTAEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVINVHDVKTIIMFRGRNYRQPKNLIPINTLTKRKATATKKAKEAALFKARFEQALDSQKLNIKKIEQQLRRMGVNPEDPVAMASIQRVASTFFNAIDKQEGSPYVFQGDKLFGAAPTEDLKLSEEPPVDSDQEELDQFIAEIEDAADKEWAVEEAAEKEELSKMRYWNREEFAGRFRRFDNPKNEDFDSDVRGARGWNHTRGRQRTTDTDDEGNDVSEGDEEWDSNDVRDLRTPESDGDDSDEVHNEFTAPRMQSGKLDFGRAKNNNSKDFKRNAEEFRRKVDEEDSGSEDMLDDLENAMWESDAEEEHDSRTSRMASNDYRSSSDDDEHLHRIKRDSKNARNLVNDHENDADYSESDEGQDEFRESRIAKQKHGQISRVNNDQGFMRNAEANFSRNMIEEDSESENMLSDSKVGMWESDDEGYSKVSKAISNDYQSGDEEEDYHITKNETSKEKDKRMKTPKQVDETWDSD* 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1555 1067 Coils Coil 643 670 - -
Vvi14g1555 1067 Coils Coil 926 946 - -
Vvi14g1555 1067 Gene3D - 524 620 IPR035920 -
Vvi14g1555 1067 Pfam No apical meristem (NAM) protein 56 197 IPR003441 GO:0003677|GO:0006355
Vvi14g1555 1067 MobiDBLite consensus disorder prediction 234 256 - -
Vvi14g1555 1067 SUPERFAMILY YhbY-like 524 618 IPR035920 -
Vvi14g1555 1067 MobiDBLite consensus disorder prediction 858 882 - -
Vvi14g1555 1067 ProSiteProfiles CRM domain profile. 523 620 IPR001890 GO:0003723
Vvi14g1555 1067 MobiDBLite consensus disorder prediction 1030 1067 - -
Vvi14g1555 1067 Gene3D NAC domain 65 221 IPR036093 GO:0003677|GO:0006355
Vvi14g1555 1067 MobiDBLite consensus disorder prediction 900 946 - -
Vvi14g1555 1067 Coils Coil 723 743 - -
Vvi14g1555 1067 MobiDBLite consensus disorder prediction 774 807 - -
Vvi14g1555 1067 MobiDBLite consensus disorder prediction 234 291 - -
Vvi14g1555 1067 MobiDBLite consensus disorder prediction 969 986 - -
Vvi14g1555 1067 MobiDBLite consensus disorder prediction 820 842 - -
Vvi14g1555 1067 FunFam NAC domain-containing protein 8 64 220 - -
Vvi14g1555 1067 ProSiteProfiles NAC domain profile. 55 216 IPR003441 GO:0003677|GO:0006355
Vvi14g1555 1067 SMART CRS1_YhbY_2 525 609 IPR001890 GO:0003723
Vvi14g1555 1067 PANTHER GROUP II INTRON SPLICING FACTOR CRS1-LIKE 391 936 IPR040286 -
Vvi14g1555 1067 MobiDBLite consensus disorder prediction 774 1067 - -
Vvi14g1555 1067 Pfam CRS1 / YhbY (CRM) domain 525 609 IPR001890 GO:0003723
Vvi14g1555 1067 MobiDBLite consensus disorder prediction 883 899 - -
Vvi14g1555 1067 SUPERFAMILY NAC domain 40 216 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1555 Vvi-Chr14 26874472 26886092 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1555 30 226 NAC Transcription Factor Family AT5G56620 54.717 1.25e-64 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi14g1555 NAM 1.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1555 - - vvi:100254349 1259.97