Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1551 ATGGCGAAATCACTCCCTTTCACCCACGTCTCCCTCCTCTTCTTCCGCCCTAAACCCACTCTCTCCCTCTTCTTCAAGCCCCCATCTCTCAGACTCCTCACAAGACCCTCCTCATTCCCACATCTTTTCTCCACTACTTCCACCCCTCACCCTCTCCAATATGACATGATCATCTCCCGCCCAGCACAGCCCCCACCCCCTCGCCCCCGCCGCCGGCTCACCCCACTCCCCAACTCTAAACCCAATGACTCGCCCGATGCAGAATCGCCCGACTCAGAAGGTTTTGAGAATTGGGTTGATCGGAAATTGTCGGGTTCGGATGATTTGCAGATGGATAAAGCAAAGAGGAAGTATTACAATAAGAGGAGGAAGAGGATGTACGGGTCGGATTCGGACGAGGATGGTGGTGCGGCGCAGGAGAAGTATGTGGAGCTGAAGCAAGAAGTGGTGGAGCTTCGCACATTGCACAAGAAAGAAGAGGAGTTGTATTTTTACGATGCTTTCGCATATCCATGGGAGAAGGAAAAGCATTATAAGATGGTGTATCAATTGGAGAAGAAGTATTTTCCTGATCATTGTTTGGATAAGGCGTTTCTTGAGCCTGGAGAAACGAATGAGAGTGCCAATAATGCGAAGGCGAAGAAGAAAGTGGGGAAGGGTGGGGAGAAGAGAGAGGAGATTGGTGATGGAGGGGACGATAAGGGTCTGGTTTTCTTTGAGGGGGAAAAGGATGAGAAAGTATCTGTTTCAGCAAAGGAGAAAGAGCTTTCAGAGAAGAAGGTGGAGGAGTTCTTTAAGTGTTTGAAGAAAGTCCCCAATAAGGATGTTGAAGGTGATCGTGGGGAGCCCTACTTTGTGACTCGGAGTAGTGAGCTGCCTCCGAGATGGGACGGGCCCAGTGGGACTGTTGTTCTGATAAACAAACCCAAAGGATGGACTTCATTTACGGTTTGTGGAAAGCTCCGCCGCCTTGTCCAAGTGAAAAAGGTAGGGCATGCTGGAACTCTTGATCCCATGGCTACTGGTTTGTTGATTGTATGTGTTGGTAAAGCCACTAAGTTGGTAGAAAGTTATCAAGGCATGGTTAAGGGTTATAGTGGAATTTTTCGTTTAGGGGAGGCTACTTCAACTTGGGATGCTGATTCTCCGGTTATTCAGCGTGAACCATGGGAGCACATCAAAGATGAGAACATAAAGAAAACTGCTGCATCATTTTGTGGGGAGATATGGCAAGTTCCTCCAATGTTTTCTGCCATCAAAGTTGGAGGTGAAAAGATGTATGAGAAAGCCAGAAGAGGAGAAAGTGTAGAACTTTCACCAAGGCGGATTTCAATTTTCAAGTTTGATATTGAGCGAAGCTTAGATGACAGACAAAATTTGGTTTTCCGGGTGACATGCTCAAAAGGGACTTATATTCGATCATTGTGTGCAGATTTTGGGAAAGCCCTTGGCAGTTGTGCTCATTTAGCTGCTCTGCGAAGAGACTCAATTGGGCCATATTCAGCAGATGATGCCTGGGAATTTAAAGATCTGGAAGAAGCTATCACCAAAGGTTATTTTTAA 1563 0.4696 MAKSLPFTHVSLLFFRPKPTLSLFFKPPSLRLLTRPSSFPHLFSTTSTPHPLQYDMIISRPAQPPPPRPRRRLTPLPNSKPNDSPDAESPDSEGFENWVDRKLSGSDDLQMDKAKRKYYNKRRKRMYGSDSDEDGGAAQEKYVELKQEVVELRTLHKKEEELYFYDAFAYPWEKEKHYKMVYQLEKKYFPDHCLDKAFLEPGETNESANNAKAKKKVGKGGEKREEIGDGGDDKGLVFFEGEKDEKVSVSAKEKELSEKKVEEFFKCLKKVPNKDVEGDRGEPYFVTRSSELPPRWDGPSGTVVLINKPKGWTSFTVCGKLRRLVQVKKVGHAGTLDPMATGLLIVCVGKATKLVESYQGMVKGYSGIFRLGEATSTWDADSPVIQREPWEHIKDENIKKTAASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESVELSPRRISIFKFDIERSLDDRQNLVFRVTCSKGTYIRSLCADFGKALGSCAHLAALRRDSIGPYSADDAWEFKDLEEAITKGYF* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1551 520 SUPERFAMILY Pseudouridine synthase 302 514 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vvi14g1551 520 CDD PseudoU_synth_EcTruB 303 514 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vvi14g1551 520 Hamap tRNA pseudouridine synthase B [truB]. 300 520 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vvi14g1551 520 MobiDBLite consensus disorder prediction 57 98 - -
Vvi14g1551 520 FunFam tRNA pseudouridine synthase B 297 519 - -
Vvi14g1551 520 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 187 518 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vvi14g1551 520 Gene3D Pseudouridine synthase 297 519 - -
Vvi14g1551 520 Pfam TruB family pseudouridylate synthase (N terminal domain) 322 472 IPR002501 GO:0006396
Vvi14g1551 520 NCBIfam tRNA pseudouridine(55) synthase TruB 302 511 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vvi14g1551 520 MobiDBLite consensus disorder prediction 209 226 - -
Vvi14g1551 520 Pfam tRNA pseudouridylate synthase B C-terminal domain 473 516 IPR032819 -
Vvi14g1551 520 MobiDBLite consensus disorder prediction 204 226 - -
Vvi14g1551 520 Coils Coil 142 162 - -
Vvi14g1551 520 MobiDBLite consensus disorder prediction 60 74 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1551 303 494 NAC Transcription Factor Family AT3G57150 32.990 7.60e-21 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1551 K03177 - vvi:100259460 961.059