Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1545 ATGAAGCACAAAAGCGAGCCTGCTCATGTTACTAAGCTAGTGAAGTACGTTCTGGTCGGACTCGTTGTTTTTCTGGGCTTGATTTGTCTGTACTGCGGATCTTTGCTCGCTCCGGGTTCCCGGAGAGCTGATGACGATGCCACCGCCGACGGCGTCGATCCCGTGCTCGGCGGATATGTACGTGAAGACGGTGATTTCGATGACTTGTTCGAAGATCAAGAGCACAACCCGGAAGTTCCCAAAAGCATACCTGTTTGTGATATGAGGTTTTCGGAGTTGATACCTTGCTTGGATAGAAATCTCATATACCAACTGAAATTGAAGCCCAATTTGGCATTAATGGAGCACTATGAGCGGCATTGTCCACCTCCAGAGCGGCGCTACAATTGCCTGATTCCACCCCCAATTGGTTACAAGATACCTATTAGATGGCCGGCAAGCAGGGATGAAGTGTGGAAGGTGAATATACCACACACACATCTTGCATCAGAGAAATCGGATCAGAATTGGATGGTTGTGAATGGAGATAAAATAAATTTTCCTGGTGGTGGAACCCATTTCCATAATGGAGCTGATAAGTACATCATTGCTCTTGCGAGGATGCTTAAGTTTCCTGATGATAAACTCAACAATGGGGGAAACATCAGGAATGTTCTTGATGTGGGTTGTGGGGTTGCAAGTTTTGGGGCCTATCTTCTCCCCCATAACATTATGGCTATGTCTCTTGCGCCCAATGATGTTCATGAGAATCAAATACAGTTTGCACTGGAGAGGGGGATCCCATCTACTCTTGGTGTCTTGGGGACAAAGAGACTTCCTTATCCAAGCAGATCATTTGAAATGGCTCATTGTTCACGATGTAGAATTGATTGGCTTCAAAGAGATGGGATTCTCTTGTTAGAACTGGATAGATTACTAAGACCAGGTGGGTATTTTGTGTACTCTTCTCCTGAAGCCTATGCACGGGATGCGGTAAATCGAAGGATTTGGAATGCTACATCTGATCTGCTGAAAAGGATGTGCTGGAGAGTTGTTTCAAAGAAAGACCAGACTGTTATATGGGCGAAGCCGACAAGTAACAGCTGTTTTGCAAAGAGAGACCCTGGGACTCTCCCCCCTCTGTGCAGTTCCGATGATGATCCTGACGCCTCTTGGAATGTGTTCATGAAGGCATGCATCACACCATACTCAGGAAAGGTGCACAGACAAAAAGGGAGTGGATTAGTTCCTTGGCCACAAAGGCTTACCACTGCACCCTCTCGCCTTGAAGAATTTGGTATCAGTGCTGAGGAATTCCAAGAAGACACTAGCATTTGGTATTTTAGAGTGTTTGAGTACTGGAAGCAGATGAAGTCTGTTGTAGAGAAGGACTCCTTCAGAAATGTCATGGATATGAACTCAAACCTTGGTGGATTTGCTGCTGCTCTTAAAGATAAAGATGTTTGGGTGATGAATGTTGCTCCTGTTAATGCATCTGCCAAACTGAAGATCATATATGATCGAGGCTTGATTGGAACAGTTCATGATTGGTGTGAATCATTTTCTACATACCCACGCACCTACGATCTACTTCATGCCTGGCAAGTGTTCTCAGAGATTGAGGAACATGGCTGTAGTTCAGAGGATCTACTAATTGAGATGGATCGGATACTACGGCCAGATGGCTTTGTCATTATAAGGGACAGACCCTCTATCATAAATTATATACAGAAGTTCTTGATTGCATTAAGGTGGGATGGCTGGTCAATAGAAGTAGAACCAAGGATTGATGTTCTTTCTGCCAGTGATGAAAGAGTTTTAATTGCAAGAAAGAAATGGGAGGAGATGGATTCAGATACATTGGCTGAGCAAATCAAAGAACACTTTAAGTACGATGCCTCTGAAGCTCCGGCACCGCCGCTTAAGCAACCGTTTGTAATCGGTGTTGCTGGTGGCACTGCATCTGGAAAAACAACTGTTTGCGATATGATTATTGCTCAGCTTCATGATCAACGAGTTGTTCTTGTAAATCAAGATTCATTTTATTGCCCGCTAAGTGATGGGAAATTAGAAAAAGTACTAGAGATTAATTTTGACCATCCAGATGCCTTCAATACAGAACTTCTGCTTGCTTGCATGGATAAGCTTAAAAATGGACAAGCAGTCAGCATTCCAAATTATGATTTCAAGACTCATAAGAACATTGAACCAGGACGTAAGATTAATGCCTCAGATGTCATTATTTTAGAAGGAATACTGGTTCTTCATGACCCTCGCGTTCGTGATCTTATGAACATGAAGATCTTTGTTGACACAGATTGTGATGTGCGGCTTGCACGGAGGATACAACGTGATACTGTTGAGAGAGGCAGAGACATTGATAATGTGCTTGACCAATATGATAAGTTTGTTAAGCCTAGTTTTGAGGAATACATTCTCCCATCTAAGAAATATGCAGACATTATAATCCCTCGAGGAGGAGATAATGACATTGCAGTTGACTTGATAGTACAACATATTCGTACGAAGCTTGGCCAGCATGATATATGTAAAATATACCCAAATGTTTTTATTATACGTCTGACATTTCAGGTTGTGGAGCATGGTCTAGGACATCTTCCTTTTACTGAAAAACAGATCACTACTCCAACAGGATCTGTATATTCTGGAGTGGTTTTCTGTAGAAGGTTGTGTGGGGTCTCAATTATTAGAAGGTATTTCTCTCTGGTGATTCAGTGA 2718 0.429 MKHKSEPAHVTKLVKYVLVGLVVFLGLICLYCGSLLAPGSRRADDDATADGVDPVLGGYVREDGDFDDLFEDQEHNPEVPKSIPVCDMRFSELIPCLDRNLIYQLKLKPNLALMEHYERHCPPPERRYNCLIPPPIGYKIPIRWPASRDEVWKVNIPHTHLASEKSDQNWMVVNGDKINFPGGGTHFHNGADKYIIALARMLKFPDDKLNNGGNIRNVLDVGCGVASFGAYLLPHNIMAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFEMAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYARDAVNRRIWNATSDLLKRMCWRVVSKKDQTVIWAKPTSNSCFAKRDPGTLPPLCSSDDDPDASWNVFMKACITPYSGKVHRQKGSGLVPWPQRLTTAPSRLEEFGISAEEFQEDTSIWYFRVFEYWKQMKSVVEKDSFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVNASAKLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWQVFSEIEEHGCSSEDLLIEMDRILRPDGFVIIRDRPSIINYIQKFLIALRWDGWSIEVEPRIDVLSASDERVLIARKKWEEMDSDTLAEQIKEHFKYDASEAPAPPLKQPFVIGVAGGTASGKTTVCDMIIAQLHDQRVVLVNQDSFYCPLSDGKLEKVLEINFDHPDAFNTELLLACMDKLKNGQAVSIPNYDFKTHKNIEPGRKINASDVIILEGILVLHDPRVRDLMNMKIFVDTDCDVRLARRIQRDTVERGRDIDNVLDQYDKFVKPSFEEYILPSKKYADIIIPRGGDNDIAVDLIVQHIRTKLGQHDICKIYPNVFIIRLTFQVVEHGLGHLPFTEKQITTPTGSVYSGVVFCRRLCGVSIIRRYFSLVIQ* 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1545 905 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 444 583 IPR029063 -
Vvi14g1545 905 FunFam Uridine kinase 631 839 - -
Vvi14g1545 905 Pfam Phosphoribulokinase / Uridine kinase family 639 825 IPR006083 GO:0005524|GO:0016301
Vvi14g1545 905 PRINTS Uridine kinase signature 768 778 - -
Vvi14g1545 905 PRINTS Uridine kinase signature 804 817 - -
Vvi14g1545 905 PRINTS Uridine kinase signature 667 678 - -
Vvi14g1545 905 PRINTS Uridine kinase signature 782 793 - -
Vvi14g1545 905 PRINTS Uridine kinase signature 637 654 - -
Vvi14g1545 905 PRINTS Uridine kinase signature 712 727 - -
Vvi14g1545 905 NCBIfam uridine kinase 638 836 IPR000764 -
Vvi14g1545 905 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 92 604 IPR004159 GO:0008168
Vvi14g1545 905 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 118 344 IPR029063 -
Vvi14g1545 905 Gene3D Vaccinia Virus protein VP39 188 363 IPR029063 -
Vvi14g1545 905 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 20 605 IPR004159 GO:0008168
Vvi14g1545 905 FunFam probable methyltransferase PMT3 190 357 - -
Vvi14g1545 905 SUPERFAMILY PRTase-like 829 898 IPR029057 -
Vvi14g1545 905 CDD UMPK 639 836 IPR000764 -
Vvi14g1545 905 Gene3D - 594 826 IPR027417 -
Vvi14g1545 905 Gene3D - 827 903 IPR029057 -
Vvi14g1545 905 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 634 829 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1545 Vvi-Chr14 26802639 26812611 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1545 624 897 PRT Gene Family AT3G27190 68.317 3.80e-137 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1545 - - vvi:100252501 1239.56