Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1541 ATGGCTTCCATCGTCGGAGCCCCATCCACTCCCTCTAAATCCCTATTCACATCACCGTCACTTTCAAACCCTAAGCCCACTTCCTTTTTCCACAAAACTCAAACCCTAGCCACCAAATCTAACCCCCCTTTCGCCTCCTCTTTCACCAATGCCTCCTCCATTTTCCGATACTCCGTCCTTTCTTCTCCGTCCACCGGATCTTCTCCATTTCGGCGCCGCTCACTCACTGTCCGCGCCGCCAGAGGCAAGTTCGAGCGCAAGAAGCCGCACGTCAACATTGGAACCATCGGCCACGTGGATCACGGCAAGACCACTCTCACGGCGGCTCTGACCATGGCGCTGGCATCCATGGGGAACAGCGCTCCCAAGAAGTACGACGAGATTGACGCGGCGCCGGAGGAACGGGCGCGTGGAATCACCATCAACACCGCTACGGTTGAGTACGAGACGGAGAGTCGGCATTACGCCCACGTGGATTGCCCAGGCCACGCTGACTACGTCAAGAACATGATCACCGGCGCGGCTCAGATGGACGGCGCCATTCTCGTCGTCTCTGGCGCCGATGGGCCGATGCCGCAGACCAAAGAGCATATTCTTCTCGCCAAGCAGGTTGGAGTGCCCAATATGGTGGTTTTCCTCAATAAGCAAGACCAGGTTGATGATGAAGAGCTTCTTCAGTTGGTTGAATTGGAGGTTCGTGAGCTTCTCGCTTCGTATGAATTTCCCGGCGACGATATTCCCATTGTATCCGGATCAGCATTGCTAGCCCTAGAGGCATTGATGGCAAACCCTAGCATTAAGAGAGGAGAGAATGAATGGGTCGATAAAATCTATGAATTGATGGATGCTGTTGATAGTTACATTCCAATTCCACAGCGCCAGACCGATTTGCCCTTCCTCCTTGCAGTTGAAGATGTGTTTTCGATCACTGGTCGTGGGACTGTGGCAACAGGTCGTGTAGAAAGGGGTACAATCAAGGTTGGGGAGACTGTTGATCTTGTTGGATTGAGAGAGACTCGGGCCACTACTGTTACTGGAGTTGAGATGTTTCAGAAAATTCTAGATGAGGCACTTGCTGGTGACAACGTGGGGCTTTTGCTGAGAGGTATTCAGAAGGCTGATATCCAGAGGGGGATGGTTCTGGCAAAGCCTGGAACTATTACGCCACACACTAAGTTCTCTGCCATTGTTTATATTTTGAAGAAGGAGGAGGGTGGGAGGCATTCGCCCTTTTTTGCAGGGTATAGGCCACAATTCTACATGAGGACTACTGATGTCACAGGCAAGGTTGCACAAATCATGAATGATAAGGATGAAGAGTCAAAGATGGTTATGCCGGGAGACCGTGTAAAGATGGTTGTGGAGCTTATAATGCCTGTGGCATGCGAACAAGGAATGAGATTTGCTATTAGAGAAGGGGGGAAGACTGTGGGTGCTGGTGTAATCCAGTCCATTATTGAATGA 1464 0.5123 MASIVGAPSTPSKSLFTSPSLSNPKPTSFFHKTQTLATKSNPPFASSFTNASSIFRYSVLSSPSTGSSPFRRRSLTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGNSAPKKYDEIDAAPEERARGITINTATVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLASYEFPGDDIPIVSGSALLALEALMANPSIKRGENEWVDKIYELMDAVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLRETRATTVTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGMVLAKPGTITPHTKFSAIVYILKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVAQIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1541 487 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 129 144 IPR031157 -
Vvi14g1541 487 Gene3D Translation factors 294 422 - -
Vvi14g1541 487 SUPERFAMILY Translation proteins 293 389 IPR009000 -
Vvi14g1541 487 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 314 IPR027417 -
Vvi14g1541 487 MobiDBLite consensus disorder prediction 1 22 - -
Vvi14g1541 487 NCBIfam small GTP-binding protein domain 91 224 IPR005225 GO:0005525
Vvi14g1541 487 CDD EF_Tu 89 291 IPR041709 -
Vvi14g1541 487 PANTHER ELONGATION FACTOR TU-RELATED 64 486 - -
Vvi14g1541 487 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 88 292 IPR000795 GO:0003924|GO:0005525
Vvi14g1541 487 Pfam Elongation factor Tu GTP binding domain 88 289 IPR000795 GO:0003924|GO:0005525
Vvi14g1541 487 Pfam Elongation factor Tu domain 2 313 381 IPR004161 GO:0005525
Vvi14g1541 487 Gene3D Translation factors 426 486 - -
Vvi14g1541 487 CDD EFTU_II 299 385 IPR033720 -
Vvi14g1541 487 Gene3D - 80 291 IPR027417 -
Vvi14g1541 487 PRINTS GTP-binding elongation factor signature 136 144 IPR000795 GO:0003924|GO:0005525
Vvi14g1541 487 PRINTS GTP-binding elongation factor signature 209 218 IPR000795 GO:0003924|GO:0005525
Vvi14g1541 487 PRINTS GTP-binding elongation factor signature 92 105 IPR000795 GO:0003924|GO:0005525
Vvi14g1541 487 PRINTS GTP-binding elongation factor signature 156 166 IPR000795 GO:0003924|GO:0005525
Vvi14g1541 487 PRINTS GTP-binding elongation factor signature 172 183 IPR000795 GO:0003924|GO:0005525
Vvi14g1541 487 CDD EFTU_III 388 482 - -
Vvi14g1541 487 FunFam Elongation factor Tu 294 422 - -
Vvi14g1541 487 Hamap Elongation factor Tu [tuf]. 79 487 IPR004541 GO:0003746|GO:0005525|GO:0006414
Vvi14g1541 487 Pfam Elongation factor Tu C-terminal domain 386 485 IPR004160 -
Vvi14g1541 487 FunFam Elongation factor Tu 426 486 - -
Vvi14g1541 487 FunFam Elongation factor Tu 79 291 - -
Vvi14g1541 487 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 386 486 IPR009001 -
Vvi14g1541 487 NCBIfam elongation factor Tu 80 487 IPR004541 GO:0003746|GO:0005525|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1541 Vvi-Chr14 26778282 26779745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1541 86 485 Eukaryotic Initiation Factors Gene Family AT5G60390 31.250 3.46e-48 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1541 K02358 - vvi:100245586 912.138