Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1534 ATGTCAGAAGGATCAAAGTGTGTGGTTGCTTCTGCTGAACACAATAAAGTAGGACCAAATTACTTTGGTTTCTATGTGCGTGAAGTAGCAGAGTTACTCTCGCAAGATAAGGATTTTCTACCTTGCTCTTCCCAAGCCTCTGAATTATCTGCAAGAACAGGTGGACAAGTTAGGGATGGGGATAAAATAAAGCATGGTTGTGATGGTAAAGAGGCCAAGAGCTCTTCTAGTTCTGGTTCTTTGTTTAGTAATGGCATTGGAGCTGGGATTTCAGATTTTAAAAATGAGAGATTGAAAGCATTGCTCAGGCAGAGTGTGACTTCTCTGACACAGGAAGTTGATGAGATGCTCGATCCTGTTCTAGCTATACGTCAGATACAAGCACATTTAAGATACAAAAAGCATCAATCCCGTAATTCGAATGGTGAATCTGATGGTTGTGCAGGGCAATTTCCCTGTAAGAAGCGTAAGATGTCCTCTCCAAATGCTAGTCATATCAGTTGTGGATCTAGTAGAGAGGGTTCAGCATTTGAGTGCGTGGATGGGGCTTCTTCGGAAAAAAGAAAATCCAATATTGTTAAAAGCTGTGCTCATTGCCACACTACAGAGACCTTGAGGTGGCGAACTGGTCCAGAGGGGCATAAGTCTCTATGTGATGCTTGTGGAATCAGACTTGAAAAGCAAAGGGAGCCTCTTTTTTGTTCAAATACAGGAGCTGAGAAAGAAAATGGAGAAGTGAATGACGATCTGAAGATCCTTCTAGAGAATGATTGCTCACTGGTTGAGGAGAGAGTGAAGAAATATTCGGATGAACTATCTGGAACACTAGGGCTTATGGAGCAGCAACTTGAACAACTTCTGGACACTGTAATGTGCCAGTGCAGGCCAATGACCCGCCGTGAGAAGCAACAGCTTCAAAAAATGATTCAGAAGCTACCTCCTAAAAATCTTGAACGTGCTGTGGAAATTATCCAGCGTGGTAAGCTACCAGAAATACACTCTGATGAAATCCATGTCAATCTGGAAAAAGAAGATAATGCAACATTGTGGAGATTGTATTATTATGTTGAAGCAGTTGAAAAGGCTAGGAAGCTTTCAAGGTAG 1104 0.4203 MSEGSKCVVASAEHNKVGPNYFGFYVREVAELLSQDKDFLPCSSQASELSARTGGQVRDGDKIKHGCDGKEAKSSSSSGSLFSNGIGAGISDFKNERLKALLRQSVTSLTQEVDEMLDPVLAIRQIQAHLRYKKHQSRNSNGESDGCAGQFPCKKRKMSSPNASHISCGSSREGSAFECVDGASSEKRKSNIVKSCAHCHTTETLRWRTGPEGHKSLCDACGIRLEKQREPLFCSNTGAEKENGEVNDDLKILLENDCSLVEERVKKYSDELSGTLGLMEQQLEQLLDTVMCQCRPMTRREKQQLQKMIQKLPPKNLERAVEIIQRGKLPEIHSDEIHVNLEKEDNATLWRLYYYVEAVEKARKLSR* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1534 367 Pfam Bromodomain extra-terminal - transcription regulation 296 357 IPR027353 -
Vvi14g1534 367 Pfam GATA zinc finger 196 230 IPR000679 GO:0006355|GO:0043565
Vvi14g1534 367 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 190 230 - -
Vvi14g1534 367 CDD ZnF_GATA 195 230 IPR000679 GO:0006355|GO:0043565
Vvi14g1534 367 Gene3D - 292 365 IPR038336 -
Vvi14g1534 367 MobiDBLite consensus disorder prediction 55 71 - -
Vvi14g1534 367 ProSiteProfiles NET domain profile. 287 367 IPR027353 -
Vvi14g1534 367 MobiDBLite consensus disorder prediction 50 79 - -
Vvi14g1534 367 PANTHER OSJNBA0053K19.4 PROTEIN 9 363 - -
Vvi14g1534 367 ProSiteProfiles GATA-type zinc finger domain profile. 190 223 IPR000679 GO:0006355|GO:0043565
Vvi14g1534 367 SMART GATA_3 190 241 IPR000679 GO:0006355|GO:0043565
Vvi14g1534 367 Gene3D - 192 251 IPR013088 GO:0006355|GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1534 190 251 C2C2-Gata Transcription Factor Family AT3G06740 46.269 4.91e-10 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vvi14g1534 BET 2.8e-20 CL0665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1534 - - vvi:100255968 725.702