Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1533 ATGGCTTCTTCGAATGCTCTCTTGAAGCCATTTTCAATGGCAGAAAGCTGCTTAACCTCTGTACCAACTACACTCTTCACCACCAAAACCCCACACCCGCTCCTCTCACTCCCACCAAAGCCCGTCAGACTCTTTCACCTCTCCTGCTCGTGTTCCTCTTCATGGGTCTCCCTCAAAACCAAGACTTCACCGACCACTTTGGTCCCATTTGTGGCACAGACCTCGGACTGGGCTCAGCAGGAGGAGGAGGAAGAGAAGGGTGGGTTGACGTGGGACAGTGAAGGAGGGGAAGAGATTGAGGCTTCTGGCTCTGAGGAAGCTTGGGAGGGTGAGGTTGGGGAAGATGGAGAAGAGAGTGAAGGGAGTGAAGATACTTACAGTGAGCCGCCTGAGGAGGCTAAGCTTTTTGTGGGGAATTTGCCTTATGATATTGATAGTGAGAAATTGGCTCAGCTTTTTGACGAGGCTGGAGTTGTGGAGATTGCAGAGGTAATTTACAATAGAGAAACAGATCAGAGTCGTGGGTTTGGGTTTATAACAATGAGCACTGTTGAAGAGGCCGAAAAGGCTGTGGAGATGTTCAACCGATATGATTTAAATGGAAGGTTTTTGACCGTCAATAAGGCTGCTCCAAGAGGGTCACGTCCAGAACGACCTCCGCAAGCATTTGAACCTTCATTCAGAATTTATGTTGGCAACCTGCCATGGCAAGTGGATGATGCTCGTCTGGAGCAAGTGTTCAGTGAGCACGGTAAGGTGGTTGATGCCAGGGTAGTCTATGACCGAGACACTCAACGTTCACGTGGATTTGGCTTTGTGACAATGTCCAGTGAGACAGAACTGAATGATGCCATTGCTGCTCTTGATGGACAGAGTTTGGATGGCAGGGCAATCAGAGTAAATGTTGCAGAGGAACGGCCGAGGCGTGGCTCCTATTAA 939 0.4952 MASSNALLKPFSMAESCLTSVPTTLFTTKTPHPLLSLPPKPVRLFHLSCSCSSSWVSLKTKTSPTTLVPFVAQTSDWAQQEEEEEKGGLTWDSEGGEEIEASGSEEAWEGEVGEDGEESEGSEDTYSEPPEEAKLFVGNLPYDIDSEKLAQLFDEAGVVEIAEVIYNRETDQSRGFGFITMSTVEEAEKAVEMFNRYDLNGRFLTVNKAAPRGSRPERPPQAFEPSFRIYVGNLPWQVDDARLEQVFSEHGKVVDARVVYDRDTQRSRGFGFVTMSSETELNDAIAALDGQSLDGRAIRVNVAEERPRRGSY* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1533 312 FunFam 31 kDa ribonucleoprotein, chloroplastic 217 311 - -
Vvi14g1533 312 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 229 299 IPR000504 GO:0003723
Vvi14g1533 312 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 135 204 IPR000504 GO:0003723
Vvi14g1533 312 PANTHER OS02G0815200 PROTEIN 33 307 - -
Vvi14g1533 312 SMART rrm1_1 228 301 IPR000504 GO:0003723
Vvi14g1533 312 SMART rrm1_1 134 207 IPR000504 GO:0003723
Vvi14g1533 312 Gene3D - 216 311 IPR012677 -
Vvi14g1533 312 Gene3D - 72 215 IPR012677 -
Vvi14g1533 312 CDD RRM2_NsCP33_like 228 303 - -
Vvi14g1533 312 MobiDBLite consensus disorder prediction 75 129 - -
Vvi14g1533 312 SUPERFAMILY RNA-binding domain, RBD 128 220 IPR035979 GO:0003676
Vvi14g1533 312 MobiDBLite consensus disorder prediction 98 126 - -
Vvi14g1533 312 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 133 211 IPR000504 GO:0003723
Vvi14g1533 312 MobiDBLite consensus disorder prediction 79 93 - -
Vvi14g1533 312 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 227 305 IPR000504 GO:0003723
Vvi14g1533 312 FunFam 31 kDa ribonucleoprotein, chloroplastic 72 216 - -
Vvi14g1533 312 SUPERFAMILY RNA-binding domain, RBD 219 310 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1533 Vvi-Chr14 26710275 26714298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1533 131 309 Eukaryotic Initiation Factors Gene Family AT3G16380 32.447 1.57e-21 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1533 - - vvi:100266472 561.992