Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1518 ATGTGTAATAACAAGAATAGTCCTCCGACTATTCCCGATCTTGAAGGCAGCTCCATGATCAGCAAAGAATCAAGTACTGTGGTGTCACTCAAACCGGCTCGGAAGATCAGGACCAAGACTAGGAAACCCAAGTTTCTCAGTCTACGGCTGGAGCTCTCCTCTGATAACTCACAAGAATCCGGCGAAACCATGACTCGCAACCACCATCATCAGCTCAACTTGTTCCCGCTGCACCCTGAAAACTTGGTGGAAGACAAGGACATGCACGACGAGAACATGGCTTACTTCTTTGCAGCCTCAGACGGTGGCGCCAACCTCAACGGCCTCCTGGGCGGAGACACCGGCGCCGCAGTTCCATCAGGGGACTCCCTATCGCCATCTCTAACATACGCGTATGGTGGGCAGGACAGCGAAGAGGGTGCAAGTACGTTGGTACGGGCGGCGCTGAGGAACAGAGAGAGAGACGCCAGTGAGGAGAAGTGGGTGTCCTACTCAGAAGTGGTGGAGAAGAAGGAAGAGGAAGTGACCAGCTGCGCCGCTGACCTATGGTATAAAAATCATACACAACGACTGTCATTGAAGCTTGATTATCAGGAGATCTTAAACGCTTGGTCCGGCAAAGGCCCACTCTTCATTGAAGGAGAGTCTCCACAGACTGTACCAGACCTTGCTCATGACGCCGCCAATGCGATGGGGGATGGTTGGAGTGGGGTGTGGAAGGTTCCAGAAATGGGAGGAAGTCGAAGCAGCATGAAAATGGAGGAAGTTGGGGGAGGAGAGGGGTCCAAAAAGGGGCAAAGGCAAGCCAGTGTGTTGAGATACAAGGAGAAGAGGCAAAGCAGGCTCTTCTCTAAGCGGATTCGATATGAGGTTCGAAAGCTCAATGCTGAGAAGCGCCCTCGTATGAAGGGTAGATTTGTGAAGAGAAGTTGA 933 0.522 MCNNKNSPPTIPDLEGSSMISKESSTVVSLKPARKIRTKTRKPKFLSLRLELSSDNSQESGETMTRNHHHQLNLFPLHPENLVEDKDMHDENMAYFFAASDGGANLNGLLGGDTGAAVPSGDSLSPSLTYAYGGQDSEEGASTLVRAALRNRERDASEEKWVSYSEVVEKKEEEVTSCAADLWYKNHTQRLSLKLDYQEILNAWSGKGPLFIEGESPQTVPDLAHDAANAMGDGWSGVWKVPEMGGSRSSMKMEEVGGGEGSKKGQRQASVLRYKEKRQSRLFSKRIRYEVRKLNAEKRPRMKGRFVKRS* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1518 310 ProSiteProfiles CCT domain profile. 267 309 IPR010402 GO:0005515
Vvi14g1518 310 MobiDBLite consensus disorder prediction 248 272 - -
Vvi14g1518 310 MobiDBLite consensus disorder prediction 1 28 - -
Vvi14g1518 310 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 25 310 - -
Vvi14g1518 310 Pfam CCT motif 267 309 IPR010402 GO:0005515
Vvi14g1518 310 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1518 Vvi-Chr14 26474691 26476234 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1518 166 309 C2C2-CO-like Transcription Factor Family AT1G25440 43.537 1.58e-27 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi14g1518 CCT 5.9e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1518 - - vvi:100254358 572.392