Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1513 ATGGGGAGTTGTGAAGACCCAGTTTCCCGACAGAATACCCATGACCAGATAGAACTAGGGCTGATGTATCCTAAACCTGATCCTGATCCTGATCCTGATGCTGAACTCCTTGTCCAGCAATTCGAAAATGTAGCCTTGAAAGATACGGAGGAGACTGAGATTCAGTACCCTTTAAGGCCTTATGCCCAAGACTGTCCGTACTATGTCCGAACTGGGTCTTGTAAGTTTGGACTGAATTGCAAGTTCAATCACCCTGTGACGAGGACAGGCCAGGTTGGCAAGGAGAGGGAAAATGAAGGAGAAGGGTTGTCGGAGAAGATCGAATGCAAGTATTACCTAACAGGAGGAGGGTGCAAGTATGGAAATTCTTGTAGATATAGTCACTCCAAAGAAACAAATGAACTAGCAACACTAGAGTATAACTTTTTAGGTTTGCCAATGAGAGTGGGAGAGAAAGAGTGCCCCTACTACATGCGTACTGGTTCTTGTGGATATGGGGCAAACTGCCGGTTTCACCATCCAGATCCTACATCTGTGGGAGGTTCAGAACCTAATGGAAATGGTGAATCTGTGGGAGGATTTGACAGTTTAGGAAATCATAATGGTGAATCTACCATATTGAATTTATCAGGTGCATCACAACCATCCATGCCTTCATGGTCTTCACATATGTTGTCAAATAAGAGAGTTCCCTACTCAGATAATCGCTCATCTTATGTGCCTGCAATGCATTCAGTTGCTCAAGGAATACATCCAAATCTTGACCTTAATGGGTATCAGGCCCCTATCCATTCCCAAGGAATGCCACGCCATCTTCATTCAGGCCTGACACTGAACAAGTTGATGAAGAAATCTGATGTCTCTCAACATTATGAGCAGACTCAGGTTGAAGAATTCCCTGAACGACCAGGAAAACCTGAGTGTGATTACTTCATGAAAACTGGGGACTGTAAATATAAATCTGCATGTAGGTATCACCATCCAAAGAGCAGAGTCCCAGGATTGCCAGTCTGTGCTCTCAGTGACAAGGGCTTACCTTTAAGACCTGGTAAAAAAATCTGTTGGCATTATGAAAGCTATGGTATTTGCAAGTATGGTCGTGCTTGTTTGTTTGATCACCCCCCGAATCATACTCCATCATCTTTCCCAGTTGGGTCCAAGTTAGACCCTCCATTGGGTCACAACTCTGCAACTGTAGGAGGGAACAGAATGGCTGGATGCCAGGATGAAATTCAGGCTTCAGGCTGGGATTGA 1254 0.4466 MGSCEDPVSRQNTHDQIELGLMYPKPDPDPDPDAELLVQQFENVALKDTEETEIQYPLRPYAQDCPYYVRTGSCKFGLNCKFNHPVTRTGQVGKERENEGEGLSEKIECKYYLTGGGCKYGNSCRYSHSKETNELATLEYNFLGLPMRVGEKECPYYMRTGSCGYGANCRFHHPDPTSVGGSEPNGNGESVGGFDSLGNHNGESTILNLSGASQPSMPSWSSHMLSNKRVPYSDNRSSYVPAMHSVAQGIHPNLDLNGYQAPIHSQGMPRHLHSGLTLNKLMKKSDVSQHYEQTQVEEFPERPGKPECDYFMKTGDCKYKSACRYHHPKSRVPGLPVCALSDKGLPLRPGKKICWHYESYGICKYGRACLFDHPPNHTPSSFPVGSKLDPPLGHNSATVGGNRMAGCQDEIQASGWD* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1513 417 SMART c3hfinal6 302 329 IPR000571 GO:0046872
Vvi14g1513 417 SMART c3hfinal6 59 86 IPR000571 GO:0046872
Vvi14g1513 417 SMART c3hfinal6 150 175 IPR000571 GO:0046872
Vvi14g1513 417 SMART c3hfinal6 104 130 IPR000571 GO:0046872
Vvi14g1513 417 SMART c3hfinal6 348 375 IPR000571 GO:0046872
Vvi14g1513 417 MobiDBLite consensus disorder prediction 1 32 - -
Vvi14g1513 417 ProSiteProfiles Zinc finger C3H1-type profile. 103 131 IPR000571 GO:0046872
Vvi14g1513 417 SUPERFAMILY CCCH zinc finger 147 175 IPR036855 GO:0046872
Vvi14g1513 417 SUPERFAMILY CCCH zinc finger 62 87 IPR036855 GO:0046872
Vvi14g1513 417 SUPERFAMILY CCCH zinc finger 107 131 IPR036855 GO:0046872
Vvi14g1513 417 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 304 329 IPR000571 GO:0046872
Vvi14g1513 417 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 151 174 IPR000571 GO:0046872
Vvi14g1513 417 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 64 85 IPR000571 GO:0046872
Vvi14g1513 417 Gene3D - 98 181 - -
Vvi14g1513 417 ProSiteProfiles Zinc finger C3H1-type profile. 59 87 IPR000571 GO:0046872
Vvi14g1513 417 ProSiteProfiles Zinc finger C3H1-type profile. 302 330 IPR000571 GO:0046872
Vvi14g1513 417 PANTHER PROTEIN PHOSPHATASE RELATED 48 397 - -
Vvi14g1513 417 MobiDBLite consensus disorder prediction 176 197 - -
Vvi14g1513 417 ProSiteProfiles Zinc finger C3H1-type profile. 148 176 IPR000571 GO:0046872
Vvi14g1513 417 SUPERFAMILY CCCH zinc finger 307 330 IPR036855 GO:0046872
Vvi14g1513 417 MobiDBLite consensus disorder prediction 1 16 - -
Vvi14g1513 417 ProSiteProfiles Zinc finger C3H1-type profile. 348 376 IPR000571 GO:0046872
Vvi14g1513 417 Pfam CCCH-type zinc finger 109 128 IPR041367 -
Vvi14g1513 417 Gene3D - 37 95 - -
Vvi14g1513 417 Gene3D - 301 387 - -
Vvi14g1513 417 Pfam RNA-binding, Nab2-type zinc finger 353 374 - -
Vvi14g1513 417 SUPERFAMILY CCCH zinc finger 350 376 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1513 Vvi-Chr14 26427663 26433977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1513 292 376 C2H2 Transcription Factor Family AT3G02830 39.535 2.82e-14 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi14g1513 zf-CCCH 9e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1513 - - vvi:100257783 895.19