Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1504 ATGGGCAGATCGGCGTCTCTCTTTTCTATGGTCCTCTGGCTATGGGTTTGTCTGCAACTCAGACCCACAACCTCTTCAATTTCCCCTCCTCTTCACACTAATCAGGGTTTTCAAGAATCGACGAATTCGAGAAATGTTAAGCAAGATCAGGATGGCGTTCATGAAGTGCATTGCTCGAGAGAAAGGAGTAGGGCAGCATGGAAAATTATTGAGGAGTATTTGATGCCCTTTGTGGAGAAAGAGGGCTATCAGATCTCAAGTAGCTGTAGGCTTCATCATGAAAATGACCTGTACAGGGATCAGGAGCAGCATAAAATCCATGTGGATATAAATGAATGGAGATGTGGGTACTGCAAAAAATCCTTCTATGCGGAGAACTATCTTGATAAGCATTTTGACAATAGACACTACAATTTGCTTAATGTGAGTCAAAACAAGTGCTTGGCAGACGTATGTGGGGCATTGCATTGTGACCATGTGATGGATTCTAAGTTACAGAAGACTAAATGCAATCCTGCAGCTGCTGCAAGGAATCACCATCTGTGTGAGAGTCTTGCTGATGGTTGTTTTCCAGTCAGTGGAGGTCCTTCAGCAAGTCGTCTTCATGAATTCTTCTTGCGCCAATTCTGTGATGCCCACACTTGCACTGGAGGCCGGAAGCCCTTCTCAAGAGGGCGCAAGAAGCGGACAAGTGTTTTCTACCTCTGTATTTCCATATTGACTCTGATGTTGCTGCCACTTTTCTACTTCTTTGTTTATTTGTACCAGAGGGGATTGAGAAGGGGTGCCCAAAATTTTCGGCGCATCTCTGAAAGTGGACGGAAGAAAAAACCAACTTAG 840 0.4452 MGRSASLFSMVLWLWVCLQLRPTTSSISPPLHTNQGFQESTNSRNVKQDQDGVHEVHCSRERSRAAWKIIEEYLMPFVEKEGYQISSSCRLHHENDLYRDQEQHKIHVDINEWRCGYCKKSFYAENYLDKHFDNRHYNLLNVSQNKCLADVCGALHCDHVMDSKLQKTKCNPAAAARNHHLCESLADGCFPVSGGPSASRLHEFFLRQFCDAHTCTGGRKPFSRGRKKRTSVFYLCISILTLMLLPLFYFFVYLYQRGLRRGAQNFRRISESGRKKKPT* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1504 279 ProSiteProfiles Zinc finger C2H2 type domain profile. 113 136 IPR013087 -
Vvi14g1504 279 MobiDBLite consensus disorder prediction 29 47 - -
Vvi14g1504 279 MobiDBLite consensus disorder prediction 29 53 - -
Vvi14g1504 279 ProSitePatterns Zinc finger C2H2 type domain signature. 115 136 IPR013087 -
Vvi14g1504 279 PANTHER ZINC FINGER PROTEIN-RELATED 20 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1504 Vvi-Chr14 26365808 26369604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1504 33 279 C2H2 Transcription Factor Family AT5G63280 66.265 8.66e-117 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi14g1504 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1504 - - vri:117931216 570.081