Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1502 ATGGGAAGACAGCCTTGTTGTGACAAGGTTGGGTTGAAGAGAGGTCCATGGACAATTGAGGAAGATCACAAACTCATGAGCTTCATCCTCAATAATGGTATCCAATGCTGGAGAATGGTTCCCAAGCTTGCAGGATTGTTGAGATGTGGAAAGAGTTGCAGACTAAGATGGATCAATTATCTGAGGCCGGATCTTAAGAGAGGCGCACTATCAGAAGTGGAAGAGAATCAGATAATCCAACTTCATTCACGTCTTGGTAACAGGTGGTCTAAGATTGCCTCACACTTCCCTGGTCGCACGGATAATGAAATCAAGAACCACTGGAATACACGAATCAAGAAGCGGCTAAAGCAACTGGGGTTAGACCCAGTGACCCACAAACCAATCGAGGAAAAGGATGAGGTCAATGAGAAAAATGACACGGTTCCAGACTCTGCTTCGTCAAAACAGCAAGAGGAAAGAAATGGTGAGAGGGGTGATACTCTAGACACAGTACAAGAGAAACAAACTGGAGGGGAAATGACCAGCCATGAAGCAAGTACTGACGATCTTTTAAATGAAATGTTGGATGGAAGCTCGGACTTGGAGTTGGGACTACTGATGAACCAGCAAACCAAAACCTCATCAAACACCTACAGTCCCTCATTTTCTCTAGAAGATTCTCTCAACCCTTCCATGGCTGAATCCTCATCTCTCCAAGATGACTGCTTACAGCAATGGGTTGATTGTACAGTGGACTCTCTACTCTCATGGGACAACTTCAATCATCTAGAACAAGAGCTTTTCTTCTTGGAAAATAGCCATTGA 807 0.4436 MGRQPCCDKVGLKRGPWTIEEDHKLMSFILNNGIQCWRMVPKLAGLLRCGKSCRLRWINYLRPDLKRGALSEVEENQIIQLHSRLGNRWSKIASHFPGRTDNEIKNHWNTRIKKRLKQLGLDPVTHKPIEEKDEVNEKNDTVPDSASSKQQEERNGERGDTLDTVQEKQTGGEMTSHEASTDDLLNEMLDGSSDLELGLLMNQQTKTSSNTYSPSFSLEDSLNPSMAESSSLQDDCLQQWVDCTVDSLLSWDNFNHLEQELFFLENSH* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1502 268 MobiDBLite consensus disorder prediction 150 164 - -
Vvi14g1502 268 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vvi14g1502 268 CDD SANT 16 61 IPR001005 -
Vvi14g1502 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vvi14g1502 268 MobiDBLite consensus disorder prediction 119 180 - -
Vvi14g1502 268 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 207 - -
Vvi14g1502 268 FunFam MYB transcription factor 11 67 - -
Vvi14g1502 268 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vvi14g1502 268 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Vvi14g1502 268 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vvi14g1502 268 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vvi14g1502 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vvi14g1502 268 Gene3D - 11 67 - -
Vvi14g1502 268 MobiDBLite consensus disorder prediction 206 229 - -
Vvi14g1502 268 FunFam MYB transcription factor 68 129 - -
Vvi14g1502 268 Gene3D - 69 157 - -
Vvi14g1502 268 CDD SANT 71 110 IPR001005 -
Vvi14g1502 268 SMART sant 13 63 IPR001005 -
Vvi14g1502 268 SMART sant 66 114 IPR001005 -
Vvi14g1502 268 MobiDBLite consensus disorder prediction 119 140 - -
Vvi14g1502 268 MobiDBLite consensus disorder prediction 165 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1502 Vvi-Chr14 26355912 26357064 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1502 1 158 MYB Transcription Factor Family AT5G16600 67.485 7.87e-78 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi14g1502 Myb_DNA-binding 1.2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1502 K09422 - vvi:109123830 550.436