Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1500 ATGGTGAGACAAGAATCGAAACAAAGCCCCGAAAAGCAGTCAGAGAGCGTTGAAAATGATGGAAGTGCAGAGTGTGTTTTCAGCCCCAGGTTCAAATCTGTGGCTGCACTGGCTGGTTGGGACGAGGAGGCTCTTCTCATCGCCAGTCTTGTGGTTGAAGACACGCCCGATCGACTGGTCAAGCACAAGAAACGCTCCGATTTGACGTTCAAGACTCCTCCATCCAATTCAAGAAGAAAACGCAGAACTCAGAGAAGGAGTCCGGCTTCAATCCCTGTTACGGTTCTTGACCTTGATGAAGGAGAAAATGCAAAAGAAGAAAGTGAGAAAAAGAAGATAGAAACAAAAACTGCCGAGCACGAAGAAAAGAACGTTACAGGAGATAAACAACAGGGTGCGGAAAGCTCTGCCGCATCTTGCTCAGCTTCAACTTCAACTTCGGTTCTTCCCTGTATGGATCGACTCAGGGAAGAGCTTTCTTGTGCAATATGTCTAGAGATATGCTTCGAGCCCAGTACCACTCCTTGTGGACATAGTTTTTGTAAGAAATGTTTGAGATCTGCTGCAGACAAATGTGGGAAGCGGTGCTCAAAGTGTAGGCAGATGATGAGCAATGGGAGATCCTGCACTGTGAACACAGTCCTGTGGAATACAATACAGCTGCTGTTTCCGCAAGAGGTTGAAGCAAGGAAAGCAGCAGGAGCCTTGAATAGTCGAGAAGCCAAGCGACAAAGCCCAGAAAAAGAGGGTCAAACTATCACAAGGAATAGGAGTGTCCGGCCTTCTTCTGGGGTTGCAAGTAGAGATGCTAGTGTGAGGAGGAGAAGAGGAATGCCAAGCCAAAGTGAGGATGCTGCATTAGCTCTTAGGTTGCAGAGAGAAGAGTTCATGGAAGCTTTCAGAGAACAACCCCACGAGGAACAGAGAAACACTGTTTCCGTAGCCAGAGCAAATTTGAGGGCTATGGCATCCAGGGCAGTTAGTCTTCGCGTTAGAGGCCGCCCTTACTTGCTCTAG 1017 0.4798 MVRQESKQSPEKQSESVENDGSAECVFSPRFKSVAALAGWDEEALLIASLVVEDTPDRLVKHKKRSDLTFKTPPSNSRRKRRTQRRSPASIPVTVLDLDEGENAKEESEKKKIETKTAEHEEKNVTGDKQQGAESSAASCSASTSTSVLPCMDRLREELSCAICLEICFEPSTTPCGHSFCKKCLRSAADKCGKRCSKCRQMMSNGRSCTVNTVLWNTIQLLFPQEVEARKAAGALNSREAKRQSPEKEGQTITRNRSVRPSSGVASRDASVRRRRGMPSQSEDAALALRLQREEFMEAFREQPHEEQRNTVSVARANLRAMASRAVSLRVRGRPYLL* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1500 338 ProSiteProfiles Zinc finger RING-type profile. 161 200 IPR001841 -
Vvi14g1500 338 PANTHER UNCHARACTERIZED 279 328 - -
Vvi14g1500 338 Coils Coil 96 123 - -
Vvi14g1500 338 MobiDBLite consensus disorder prediction 99 128 - -
Vvi14g1500 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 230 IPR013083 -
Vvi14g1500 338 ProSitePatterns Zinc finger RING-type signature. 176 185 IPR017907 -
Vvi14g1500 338 MobiDBLite consensus disorder prediction 1 24 - -
Vvi14g1500 338 SUPERFAMILY RING/U-box 153 224 - -
Vvi14g1500 338 SMART ring_2 161 199 IPR001841 -
Vvi14g1500 338 MobiDBLite consensus disorder prediction 1 18 - -
Vvi14g1500 338 MobiDBLite consensus disorder prediction 235 283 - -
Vvi14g1500 338 Pfam Zinc finger, C3HC4 type (RING finger) 161 199 IPR018957 GO:0046872
Vvi14g1500 338 MobiDBLite consensus disorder prediction 235 254 - -
Vvi14g1500 338 MobiDBLite consensus disorder prediction 56 139 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1500 158 200 C2H2 Transcription Factor Family AT5G39550 47.727 7.44e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1500 - - vvi:100268016 592.423