Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1490 ATGTACCTGTCGGAGAAGGCTCGTCCGATTGATTTCTACAAGGAAGGAGGAGGGAGAGAGATGATGCTCGAAGTGGTGGCCAATAACGGGCTCTCACCTCAACAGCAGCAGCAGCAGATGATTCTAGCTGAGAGCAGTGGAGAAGACCACGAAATGAAGGCGCCGAAGAAGAGAGCCGAGACTTGGGTGCAGGAGGAGACACGAAACTTGATAAGCTTCAGGAGAGAGGTGGATGGGCTCTTCAACACATCCAAATCGAATAAGCATTTATGGGAACAGATCTCCGCCAAAATGAGGGAGAAAGGTTTTGATAGATCACCGACCATGTGCACTGATAAATGGAGGAATTTATTGAAGGAATTCAAGAAGGCGAAGCACCAGGATCGGAGTAGCAGTAGTGGTTCGGCCAAGATGGCATATTATAAAGAGCTTGAGGAGTTGCTTAGAGATAGGAGCAAGAATGGTTCATACAAGAGCCCCACACCTTCTAAGGTTGATTCTTATATTCAATTTTCTGATAAAGGTCTTGAGGATGCTGGTATACCATTTGGATCGGTGGAAGCTAGTGGCCGGTCAACAGTCAACCTTGAAAGGCCTTTGGATCATGATGGTGATCCTCTTGCAATTACGGCAGCTGATGCAGTTGCAGCCAGTGGAGTCCCACCTTGGAATTGGAGAGAGACCCCTGGGAATGGTGGGGAGGGCCACTCTTCTTATGGTGGAAGGGTCATATCAGTCAAATGGGGTGAATACACCAGAAGAATTGGTATTGATGGAAATCTAGGTGCAATCAAGGATGCAATCAAGAGTGCTTTCAATTTACGAACTAAACGGGCATTTTGGTTGGAGGATGAAGATGGAGTCGTCCGATGTCTTGACAGGGACATGCCTCTTGGGAATTACACACTCCACCTTGATGAAGGAGTGACCATAAAGGTCTGCCTCTATGATGACCCTGATCGCATAACTGTCCGAACGGAAGAGAAAACATTGTATACAGAAGAGGATTTCCGTGACTTTCTTGCCCGACGTGGCTTGATAGGCTTAAGAGAGTTGACTGGGTACAGAAGCTTTCACACCTTGGATGATCTCCATTCTGGAGCAATGTACCAGGGGGTGAGACTTCTGGGGGACTAG 1137 0.4758 MYLSEKARPIDFYKEGGGREMMLEVVANNGLSPQQQQQQMILAESSGEDHEMKAPKKRAETWVQEETRNLISFRREVDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRSSSSGSAKMAYYKELEELLRDRSKNGSYKSPTPSKVDSYIQFSDKGLEDAGIPFGSVEASGRSTVNLERPLDHDGDPLAITAADAVAASGVPPWNWRETPGNGGEGHSSYGGRVISVKWGEYTRRIGIDGNLGAIKDAIKSAFNLRTKRAFWLEDEDGVVRCLDRDMPLGNYTLHLDEGVTIKVCLYDDPDRITVRTEEKTLYTEEDFRDFLARRGLIGLRELTGYRSFHTLDDLHSGAMYQGVRLLGD* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1490 378 CDD GT1 60 125 - -
Vvi14g1490 378 PANTHER FI21293P1 32 345 - -
Vvi14g1490 378 ProSiteProfiles Myb-like domain profile. 54 118 IPR001005 -
Vvi14g1490 378 Pfam Myb/SANT-like DNA-binding domain 61 147 IPR044822 -
Vvi14g1490 378 Gene3D - 62 124 - -
Vvi14g1490 378 SMART sant 58 120 IPR001005 -
Vvi14g1490 378 FunFam trihelix transcription factor GT-1 62 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1490 Vvi-Chr14 26243974 26261729 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1490 21 374 Trihelix Transcription Factor Family AT3G25990 64.187 5.67e-166 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vvi14g1490 Myb_DNA-bind_4 1.3e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1490 - - vvi:100264546 753.821