LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi14g1475	ATGGAGAAATCGAACCTTCACATCGATCCTAAGAGCGGTTTCTGCTCGGCTACCAAGACCTTCCATAGCCTCAAACCCACCGTTGAGCTCCCACCTCAACATCTCCTTCTCTCCGCCGATGCATATGCTTTTTCTCTCCGATCCGGTTTGGGTTGCCCTGACTCGGCCGCTCTCATCAACTCAACCACCGGTCACCGCCTCTTATATTCTGAATTCGCCCTCCGCTCCAAGACCTTGGCCGCTTATCTCCAAACAGTCATCGGGCTCTCCAAAGGCGATACTGCGTTTGTACTCTCTTCCAATCTCATTCAGGTTCCGATTCTATACTTCTCTCTGCTCTCACTCGGCGTAATCATCTCTCCTGCCAATCCAATCAACACCCAATCCGAAATTTCCCGTCTAATAGAGCTGTGCAAGCCCGTGATTGCCTTTTCCATCTCAACTGCTGCTCACAAGCTTCCCAGCCTCCATCACAGAACCGTTATCATCGACTCGTTCGAGTTCGACTCAATGATGACAGGTCCAATCCGTGAACTCGTCCCCGTGGAGGTGAGTCAATCAGATCTGGCGGCGATAATGTATTCGTCGGGGACGACCGGGAGAGTCAAGGGAGTGATGTTGACTCACCGGAATCTGATTGCGATGACCGCGAGCATCCACGAGGGGCAATCTGTGAGGAGTTCGCCGGATGTACTGTTATACACAGTACCCTTTTTTCACATGATTGGCTTTTTCTACTGTGTAAAGTCTGTGGCCTTGAACGAGACAGTGGTGGTGATGGAAAGGTTTGACTTAAGAAGAATGCTCACGTTGGTGGAGAAATTTAAGGTGACTCACATGGCGGTGGTTCCGCCGGTGTTGGTGGCGATGGCCAAAGGAGATGCAACGGACAACAACGACTTAACGTCGTTGGAGAGCGTGTCGTGCGGCGGAGCCCCGCTTGGGAAGGACTTGTGCCAAGCATTCACTGCCAAGTTCCCCAATGTTGCTATACGGCAGGGTTATGGGCTGACTGAATCATCGGGGGCAGTTTCCCGACTACTGGATCCTGAAGAATGTCGTCATTGGGGCTCAGTAGGAAGGCTTACAGGGATTTTTGAAGCAAAAATCGTGGACCCAGACACGGGCCTTGCGCTGCCTCCCTGCAAACAAGGAGAACTTTGGGTTAGAGGACCTGCAGTTATGAAAGGCTATGTTGGGGACCGAAAGGCAACTCGGGAAACTTTGGTTTCAGATGGGTGGTTGAGGACAGGTGATCTTTGTTATATTGATGGGGAAGGTTTCCTTTATGTTGTAGATAGACTCAAGGAACTTATCAAATACAAAGGATACCAAGTTGCCCCTGCGGAGCTGGAACACTTGCTCCAATCCCATCCTGAGATTGTTGATGCTGCTGTGATACCATACCCTGATGAAGAAGCTGGTGAAGTCCCTATGGCCTATGTAGTAAGACGGCCCCAGAGCAGCCTGAATGAAGCACAAGTGATGGATTTTATTGCAAAACAGGTTGCAGCATACAAGAAAATAAGACGTGTATTGTTTGTGAGTTCCATACCCAAGAGTCCGGCTGGGAAAATACTGAGGAAGGAGTTGCGGAAGCTGGCTGTCCCTGGGTCTCTGTCTAAATTGTAA	1632	0.5025	MEKSNLHIDPKSGFCSATKTFHSLKPTVELPPQHLLLSADAYAFSLRSGLGCPDSAALINSTTGHRLLYSEFALRSKTLAAYLQTVIGLSKGDTAFVLSSNLIQVPILYFSLLSLGVIISPANPINTQSEISRLIELCKPVIAFSISTAAHKLPSLHHRTVIIDSFEFDSMMTGPIRELVPVEVSQSDLAAIMYSSGTTGRVKGVMLTHRNLIAMTASIHEGQSVRSSPDVLLYTVPFFHMIGFFYCVKSVALNETVVVMERFDLRRMLTLVEKFKVTHMAVVPPVLVAMAKGDATDNNDLTSLESVSCGGAPLGKDLCQAFTAKFPNVAIRQGYGLTESSGAVSRLLDPEECRHWGSVGRLTGIFEAKIVDPDTGLALPPCKQGELWVRGPAVMKGYVGDRKATRETLVSDGWLRTGDLCYIDGEGFLYVVDRLKELIKYKGYQVAPAELEHLLQSHPEIVDAAVIPYPDEEAGEVPMAYVVRRPQSSLNEAQVMDFIAKQVAAYKKIRRVLFVSSIPKSPAGKILRKELRKLAVPGSLSKL*	544

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi14g1475	543	Pfam	AMP-binding enzyme C-terminal domain	450	525	IPR025110	-
	Vvi14g1475	543	CDD	4CL	31	531	-	-
	Vvi14g1475	543	Pfam	AMP-binding enzyme	53	441	IPR000873	-
	Vvi14g1475	543	FunFam	4-coumarate--CoA ligase 2	437	537	-	-
	Vvi14g1475	543	ProSitePatterns	Putative AMP-binding domain signature.	192	203	IPR020845	-
	Vvi14g1475	543	Gene3D	-	437	536	IPR045851	-
	Vvi14g1475	543	Gene3D	-	26	436	IPR042099	-
	Vvi14g1475	543	PANTHER	LONG-CHAIN-FATTY-ACID--COA LIGASE	14	533	-	-
	Vvi14g1475	543	SUPERFAMILY	Acetyl-CoA synthetase-like	52	536	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi14g1475	Vvi-Chr14	26130603	26132915	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi14g1475	8	543	Monolignol Biosynthesis Gene Families	AT5G63380	52.338	0.0	576

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi14g1475	-		-	vvi:100242222	1062.37

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