Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1475 ATGGAGAAATCGAACCTTCACATCGATCCTAAGAGCGGTTTCTGCTCGGCTACCAAGACCTTCCATAGCCTCAAACCCACCGTTGAGCTCCCACCTCAACATCTCCTTCTCTCCGCCGATGCATATGCTTTTTCTCTCCGATCCGGTTTGGGTTGCCCTGACTCGGCCGCTCTCATCAACTCAACCACCGGTCACCGCCTCTTATATTCTGAATTCGCCCTCCGCTCCAAGACCTTGGCCGCTTATCTCCAAACAGTCATCGGGCTCTCCAAAGGCGATACTGCGTTTGTACTCTCTTCCAATCTCATTCAGGTTCCGATTCTATACTTCTCTCTGCTCTCACTCGGCGTAATCATCTCTCCTGCCAATCCAATCAACACCCAATCCGAAATTTCCCGTCTAATAGAGCTGTGCAAGCCCGTGATTGCCTTTTCCATCTCAACTGCTGCTCACAAGCTTCCCAGCCTCCATCACAGAACCGTTATCATCGACTCGTTCGAGTTCGACTCAATGATGACAGGTCCAATCCGTGAACTCGTCCCCGTGGAGGTGAGTCAATCAGATCTGGCGGCGATAATGTATTCGTCGGGGACGACCGGGAGAGTCAAGGGAGTGATGTTGACTCACCGGAATCTGATTGCGATGACCGCGAGCATCCACGAGGGGCAATCTGTGAGGAGTTCGCCGGATGTACTGTTATACACAGTACCCTTTTTTCACATGATTGGCTTTTTCTACTGTGTAAAGTCTGTGGCCTTGAACGAGACAGTGGTGGTGATGGAAAGGTTTGACTTAAGAAGAATGCTCACGTTGGTGGAGAAATTTAAGGTGACTCACATGGCGGTGGTTCCGCCGGTGTTGGTGGCGATGGCCAAAGGAGATGCAACGGACAACAACGACTTAACGTCGTTGGAGAGCGTGTCGTGCGGCGGAGCCCCGCTTGGGAAGGACTTGTGCCAAGCATTCACTGCCAAGTTCCCCAATGTTGCTATACGGCAGGGTTATGGGCTGACTGAATCATCGGGGGCAGTTTCCCGACTACTGGATCCTGAAGAATGTCGTCATTGGGGCTCAGTAGGAAGGCTTACAGGGATTTTTGAAGCAAAAATCGTGGACCCAGACACGGGCCTTGCGCTGCCTCCCTGCAAACAAGGAGAACTTTGGGTTAGAGGACCTGCAGTTATGAAAGGCTATGTTGGGGACCGAAAGGCAACTCGGGAAACTTTGGTTTCAGATGGGTGGTTGAGGACAGGTGATCTTTGTTATATTGATGGGGAAGGTTTCCTTTATGTTGTAGATAGACTCAAGGAACTTATCAAATACAAAGGATACCAAGTTGCCCCTGCGGAGCTGGAACACTTGCTCCAATCCCATCCTGAGATTGTTGATGCTGCTGTGATACCATACCCTGATGAAGAAGCTGGTGAAGTCCCTATGGCCTATGTAGTAAGACGGCCCCAGAGCAGCCTGAATGAAGCACAAGTGATGGATTTTATTGCAAAACAGGTTGCAGCATACAAGAAAATAAGACGTGTATTGTTTGTGAGTTCCATACCCAAGAGTCCGGCTGGGAAAATACTGAGGAAGGAGTTGCGGAAGCTGGCTGTCCCTGGGTCTCTGTCTAAATTGTAA 1632 0.5025 MEKSNLHIDPKSGFCSATKTFHSLKPTVELPPQHLLLSADAYAFSLRSGLGCPDSAALINSTTGHRLLYSEFALRSKTLAAYLQTVIGLSKGDTAFVLSSNLIQVPILYFSLLSLGVIISPANPINTQSEISRLIELCKPVIAFSISTAAHKLPSLHHRTVIIDSFEFDSMMTGPIRELVPVEVSQSDLAAIMYSSGTTGRVKGVMLTHRNLIAMTASIHEGQSVRSSPDVLLYTVPFFHMIGFFYCVKSVALNETVVVMERFDLRRMLTLVEKFKVTHMAVVPPVLVAMAKGDATDNNDLTSLESVSCGGAPLGKDLCQAFTAKFPNVAIRQGYGLTESSGAVSRLLDPEECRHWGSVGRLTGIFEAKIVDPDTGLALPPCKQGELWVRGPAVMKGYVGDRKATRETLVSDGWLRTGDLCYIDGEGFLYVVDRLKELIKYKGYQVAPAELEHLLQSHPEIVDAAVIPYPDEEAGEVPMAYVVRRPQSSLNEAQVMDFIAKQVAAYKKIRRVLFVSSIPKSPAGKILRKELRKLAVPGSLSKL* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1475 543 Pfam AMP-binding enzyme C-terminal domain 450 525 IPR025110 -
Vvi14g1475 543 CDD 4CL 31 531 - -
Vvi14g1475 543 Pfam AMP-binding enzyme 53 441 IPR000873 -
Vvi14g1475 543 FunFam 4-coumarate--CoA ligase 2 437 537 - -
Vvi14g1475 543 ProSitePatterns Putative AMP-binding domain signature. 192 203 IPR020845 -
Vvi14g1475 543 Gene3D - 437 536 IPR045851 -
Vvi14g1475 543 Gene3D - 26 436 IPR042099 -
Vvi14g1475 543 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 14 533 - -
Vvi14g1475 543 SUPERFAMILY Acetyl-CoA synthetase-like 52 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1475 Vvi-Chr14 26130603 26132915 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1475 8 543 Monolignol Biosynthesis Gene Families AT5G63380 52.338 0.0 576
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1475 - - vvi:100242222 1062.37