Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1474 ATGGGGATATCCGACTTTGCTGTCGATCCACGAAGCGGGTTCTGCGCGGAAACTAGGACTTTTCACAGCCTCAGACCTACTGTTCAACTTCCACCGGAGAATGTTCTTCTCTCGGCCGATGCATATACTTACTCACTCCGAGCCCCTTCGCCCGGCGATGACTCACCCGTTATCATCAACTCAACCACCGGTCAGCGGCTGTCTTACTCCGAATTCGTCCGCCGCTCCAAAACCTTGGCAGCCTATCTCCAATCGATAGTCGGGCTAAACAAAGGCGACGCCGCGTATATACTCTCTAACAATCTCATTCAAGTTCCGGTGCTGTACTTTGCTCTGCTCTCACTCGGGGTAGTCGTCTCTCCGGCCAATCCAATCAATACCAAAGCCGAAGTCGCCCGCCAAACCCAGCTGTGCAGGCCCGTGATCGCCTTTACCATCTCAACCGCTGTTCACAAGATTCCAAAACTCCGGTACGGAACCATTGTCATCGACTCGTTCGAGTTCGAGTTAATGATGACGAGTCCGAGACGTGAAATGGTCGACGTTAAGGTGAGTCAATCAGATCTGGCGGGGATCATGTACTCGTCGGGGACAACCGGTAATGTCAAGGGAGTGATGGTGACTCACCGGAATTTGATTGCGATGACCGGGAGTTATATGCAACGGAAGGCCAATTCGCCGGTAGTGCTACTGCAGATAGTGCCGTATTTCCATGTGTACGGATTTCATTACGTTTTCAAGTGCATGGCAATGAATGTGACAGTGGTGATTATGGAAAAGTATGATTTGGAGAAAACGATTGATGCAGTGGAGAAGTACAAGGTGACGGACTTGGCTGTTGCTCCACCAGTGGTGGTGGCCATGTCGAAAAAGGCTGTAACGGAGGGCCGCGATTTGAGTTCTTTGGAAACCGTGGCGTCCGGGGGAGCCCCTCTCGGCAAGGAACTGATCGAAGCATTCACAGCCAAGTTCCCCGGCACAGTGATCAGCCAGGGTTACGGGATGACTGAAGTAATTGGAAGAATCTCCGAAGCATTGGATCGGGAAGAATGTTCCCGCTGGGGCTCATCAGGAAAGTTTCCAGGAATTTGGGAAGCCAAAATTGTTGATCAGGAAACAGGCGCTTCACTGCCTCCACTCAAGCGGGGGGAGCTTTGGGTGAAAGGACCTTCAATTATGAAAGGATATGTTAACGACCCAAAGGCAACTTCTGAAACTTTGACACCGGATGGGTGGCTGAGGACCGGTGACCTTTGTTATATTGATGAGGATGGCTTCCTCTTTATAGTAGATAGACTCAAGGAACTAATCAAATACAAAGGATACCAGGTTGCTCCTGCAGAATTGGAACACTTGCTTCAATCCCATCCCCAGATAGTTGATGCTGCAGTGATACCATACCCTGATGACGAAGCTGGTCAAGTGCCAATGGCGTTTATAGTCAGACGACCCGAGAGTAAACTAGACGAAGCCCAAGTGATGGACTTCATCGCAAAACAGGTTGCACCATACAAGAAAATAAGGCGTGTGTCATTTGTCACTAGCATACCCAAGAATGCATCGGGGAAAATATTGAGGAAAGAGTTGAAGAAGATCAGCCTTCCAGAATCTTTCCCCAAGTTGTGA 1626 0.4975 MGISDFAVDPRSGFCAETRTFHSLRPTVQLPPENVLLSADAYTYSLRAPSPGDDSPVIINSTTGQRLSYSEFVRRSKTLAAYLQSIVGLNKGDAAYILSNNLIQVPVLYFALLSLGVVVSPANPINTKAEVARQTQLCRPVIAFTISTAVHKIPKLRYGTIVIDSFEFELMMTSPRREMVDVKVSQSDLAGIMYSSGTTGNVKGVMVTHRNLIAMTGSYMQRKANSPVVLLQIVPYFHVYGFHYVFKCMAMNVTVVIMEKYDLEKTIDAVEKYKVTDLAVAPPVVVAMSKKAVTEGRDLSSLETVASGGAPLGKELIEAFTAKFPGTVISQGYGMTEVIGRISEALDREECSRWGSSGKFPGIWEAKIVDQETGASLPPLKRGELWVKGPSIMKGYVNDPKATSETLTPDGWLRTGDLCYIDEDGFLFIVDRLKELIKYKGYQVAPAELEHLLQSHPQIVDAAVIPYPDDEAGQVPMAFIVRRPESKLDEAQVMDFIAKQVAPYKKIRRVSFVTSIPKNASGKILRKELKKISLPESFPKL* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1474 541 Gene3D - 435 534 IPR045851 -
Vvi14g1474 541 CDD 4CL 31 529 - -
Vvi14g1474 541 SUPERFAMILY Acetyl-CoA synthetase-like 53 534 - -
Vvi14g1474 541 Pfam AMP-binding enzyme 54 439 IPR000873 -
Vvi14g1474 541 Pfam AMP-binding enzyme C-terminal domain 448 523 IPR025110 -
Vvi14g1474 541 ProSitePatterns Putative AMP-binding domain signature. 192 203 IPR020845 -
Vvi14g1474 541 FunFam 4-coumarate--CoA ligase 2 435 535 - -
Vvi14g1474 541 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 14 531 - -
Vvi14g1474 541 Gene3D - 25 434 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1474 Vvi-Chr14 26123304 26126211 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1474 8 541 Monolignol Biosynthesis Gene Families AT5G63380 49.094 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1474 - - vvi:100247354 1066.99