Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1429 ATGGAGGAAGATCCAAGCCAGGTTGCAGAAACAACAACCACCACCACCTCAAGCGTGGAGGGAGTAGGAGAGGGGGAAGAGAGGGACCTGGAAAGCAATCCACTGAACCAGCCACTGCTGAAGAGAAGCCGAACACTCTCCTCCAATCCTCTGGCCATAGTTGGGGCCAAGGTCTCTCATATAGAGAGCTTGGACTATGAGATCAATGAGAATGACCTCTTCAAGCATGATTGGAGAAGCAGATCATCAGCCCAAGTACTGCAGTACATATTCTTGAAATGGTCGCTGGCATTCCTTGTTGGGCTGCTCACTGGCCTGATTGCCACCCTCATCAATCTTGCTGTAGAGAATATTGCCGGTTACAAGCTTCTAGCTGTGTCTGGCTTAGTAGAGAAGAAAAGGTATTTGACAGGATTCATTTATTTGACAACGGCCAATTTCGTATTGACTTTGTTTGCTGCTTTCCTGTGTGTGTGCTTTGCACCTACTGCGGCTGGGCCTGGTATACCAGAGATCAAAGCTTATCTCAATGGAGTAGATACTCCCAACATGTTTGGTGCCTCCACATTGATTGTCAAGATATTTGGAAGCATAGGAGCTGTTTCTGCAGGCCTAGATCTGGGGAAAGAAGGGCCTCTAGTGCATATTGGTAGCTGCATTGCTTCCCTACTAGGCCAGGGTGGACCTGAAAATTATCGTATAAAATGGCGCTGGCTCCGCTACTTTAACAATGACCGTGACAGACGTGATCTCATCACATGTGGGGCTTCTTCAGGGGTTTGTGCAGCTTTCCGGGCTCCAGTTGGTGGTGTCCTGTTTTCTCTGGAAGAAGTGGCTACATGGTGGAGGAGTGCCCTCCTCTGGAGAACTTTCTTCAGCACAGCGGTTGTGGCCGTGGTACTTAGAGCTTTCATTGAATATTGTAATTCTGGGAAATGCGGGCTTTTCGGGAGAGGAGGACTCATCATGTTTGATGTGAGCGATGTTACTGTGACATACCATGCCATGGATATCGCCCCTGTTGCATTAATTGGATTAATTGGTGGTGTGTTGGGAAGCCTTTACAATCACCTTCTCCACAAGGTCCTGAGGGTCTACAATCTCATTAATCAGAAGGGAAAAATACATAAGCTTCTTCTGAGTCTGAGTGTCTCACTATTCACCTCAATTTGCTTGTATTGCTTGCCTTTCCTTGCCACTTGCTCACCTTGTGATTCCTCAATCACTGAGACTTGCCCCACCAATGGACGGACTGGCAACTTCAAGCAATTCAACTGCCCCGATGGCTACTACAATGACCTAGCCAGTCTCCTCTTCACCACCAATGATGATGCGGTTCGAAACATCTTCTCTACTAACACTGCAACAGAGTTCCACCCCCTTTCCCTCTTAATATTCTTCGGACTCTATTATATTCTGGGCCTGATTACCTTTGGTATTGCTGTACCATCTGGCCTCTTCCTCCCCATCATCTTAATGGGTTCAGCTTATGGCCGCTTGCTTGGCATTGCCATGGGCTCCTACACAAAAATTGACCAAGGGCTTTATGCTGTTCTTGGTGCAGCCTCCCTGATGGCTGGTTCAATGAGGATGACGGTTTCCCTCTGTGTCATATTCCTTGAACTCACAAACAATCTGCTCTTACTACCCATAACAATGATTGTCCTCCTAATAGCCAAAAGTGTTGGTGATTGCATCAACCCAAGCATTTATGACATAATACTGCACCTCAAAGGCCTGCCTTTCTTGGATGCGAATCCTGAGCCATGGATGAGAAATTTAACTGTTGGGGAGCTTGCAGATGCCAAGCCACCAGTAGTTACCCTTCGTGGAGTGGAAAAGGTAGCCCGCATTGTAGATGTCCTGAGAAATACCACGCACAATGGTTTCCCAGTGGTAGATGAAGGGGTGGTACCGCGGGTTGGCCTGGCCATAGGGGCAACTGAACTGCATGGAATTGTACTAAGAGCACACCTTGTTAAAGTGCTGAAGAAGAAGTGGTTCCTGCAAGAGAGAAGGAGAACAGAGGAGTGGGAAGTGAGAGAGAAATTCACCTGGATTGAACTGGCCGAGAGGGAGGGAAAGTTTGAGGAAGTGGCTGTGACAAATGATGAAATGGAAATGTACGTTGATTTGCATCCTCTGACCAACACAACCCCTTATACAGTGGTGGAAAGCATGTCAGTGGCAAAAGCAATGGTGCTCTTCAGGCAGGTGTCTCCAGTAGTTGGGATCTTGACCAGGCAGGATTTGAGAGCCTACAACATTTTGACAGCCTTTCCCCATCTAGCAAAATCCAAGGAAAGGGAAAAGGGGAACTGA 2322 0.4759 MEEDPSQVAETTTTTTSSVEGVGEGEERDLESNPLNQPLLKRSRTLSSNPLAIVGAKVSHIESLDYEINENDLFKHDWRSRSSAQVLQYIFLKWSLAFLVGLLTGLIATLINLAVENIAGYKLLAVSGLVEKKRYLTGFIYLTTANFVLTLFAAFLCVCFAPTAAGPGIPEIKAYLNGVDTPNMFGASTLIVKIFGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPENYRIKWRWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVAVVLRAFIEYCNSGKCGLFGRGGLIMFDVSDVTVTYHAMDIAPVALIGLIGGVLGSLYNHLLHKVLRVYNLINQKGKIHKLLLSLSVSLFTSICLYCLPFLATCSPCDSSITETCPTNGRTGNFKQFNCPDGYYNDLASLLFTTNDDAVRNIFSTNTATEFHPLSLLIFFGLYYILGLITFGIAVPSGLFLPIILMGSAYGRLLGIAMGSYTKIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKSVGDCINPSIYDIILHLKGLPFLDANPEPWMRNLTVGELADAKPPVVTLRGVEKVARIVDVLRNTTHNGFPVVDEGVVPRVGLAIGATELHGIVLRAHLVKVLKKKWFLQERRRTEEWEVREKFTWIELAEREGKFEEVAVTNDEMEMYVDLHPLTNTTPYTVVESMSVAKAMVLFRQVSPVVGILTRQDLRAYNILTAFPHLAKSKEREKGN* 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1429 773 CDD CBS_pair_voltage-gated_CLC_euk_bac 603 754 - -
Vvi14g1429 773 Pfam Voltage gated chloride channel 150 563 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi14g1429 773 SUPERFAMILY Clc chloride channel 71 585 IPR014743 -
Vvi14g1429 773 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 37 757 - -
Vvi14g1429 773 PRINTS Plant CLC chloride channel signature 67 75 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi14g1429 773 PRINTS Plant CLC chloride channel signature 292 302 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi14g1429 773 PRINTS Plant CLC chloride channel signature 310 317 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi14g1429 773 PRINTS Plant CLC chloride channel signature 434 450 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi14g1429 773 PRINTS Plant CLC chloride channel signature 278 286 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi14g1429 773 CDD ClC_6_like 62 583 - -
Vvi14g1429 773 Gene3D Clc chloride channel 85 585 - -
Vvi14g1429 773 MobiDBLite consensus disorder prediction 7 21 - -
Vvi14g1429 773 MobiDBLite consensus disorder prediction 1 36 - -
Vvi14g1429 773 SUPERFAMILY CBS-domain pair 587 753 IPR046342 -
Vvi14g1429 773 SMART cbs_1 605 664 IPR000644 -
Vvi14g1429 773 FunFam Chloride channel ClC3 85 410 - -
Vvi14g1429 773 PRINTS Chloride channel signature 514 530 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi14g1429 773 PRINTS Chloride channel signature 570 584 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi14g1429 773 PRINTS Chloride channel signature 532 551 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi14g1429 773 PRINTS Chloride channel signature 193 212 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi14g1429 773 PRINTS Chloride channel signature 257 276 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi14g1429 773 PRINTS Chloride channel signature 482 502 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi14g1429 773 PRINTS Chloride channel signature 162 179 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1429 Vvi-Chr14 25779610 25783857 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1429 1 767 Ion Channels AT3G27170 79.310 0.0 1246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1429 K05016 - vvi:100260066 1478.38