Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1424 ATGGTGATGGTTTCTGCTTTATATGCCTTCAGCCAAGCATTTGAACAGGCAGGAAGAGTTCCAGGTCGTGTTTTTGGCATGAGAGGTGATATTGACATTGAGAAGATTAAGCAGTCAAAGTATTTCCGTGCTCTTCTTCAGCAATCAAAGGGAGGAGCTGCAAACGAATTGGTGGACCAATTAGGCAGGCAAGACCAATTGAGTTTCAAGGCATCCAAAGTTCTGACACAATCAAAGTTGATATCCTTGTATGGAAATGACAAGAGTTCATACAAGAGTTCTATGCACTCAAAGAGTAACAGCTCTGAGGACTGTGTTATTGTAGAAAAGGCTCACTCATATCACAGTCATCCTAAAGGTCAAGGTGCCTCTGCATTTTTGAAAGTTGAAGAGGAAGAAAGAGCCCATGGAAATGGTTTGGGGACAAAACGTGGACACATGGAAATTAGTAGCCCCGGGAATGATATTGCGAAGTCGCCATCAAGCAATGAAGAAACCCAAAACGATGGTTTTGGTAAAGGTTTTGTAACTGCCAGAGCAAAACTGGAAATGGATGCAAGGCAAAGACGAGGTTCAGCAGGGTCACCTAGTGCTTCTGTTTCACCTCAAAGTGATAACAATTTCACCAGTAGGGGTTATGGTGCAAAATCATATGGTTTTCCACGCCGTGGCATCCGTGGTAATTTTGTTCCTCCTATCAGATCCAATGGGGGCAATGCTAGTAATATGACCTCACAAATTGCAGGAAAGGGCGATGATGCTTTAGATGACTCAACAAAGAGATGCTTGGAAATGTTATATGGGCCTGATGGTGAAGTTCCTGAGAAATTAAGGAATTTGGAACCTCGTCTTATTGAACATGTCAGTAATGAGATAATGGATAGGGATCCCAATGTTCGGTGGGATGATATTGCTGGTCTGGAGCATGCTAAAAAATGTGTAACTGAGATGGTTATATGGCCTTTATTACGTCCTGACATATTTAAAGGCTGCCGTTCTCCAGGAAGAGGTCTTCTTCTTTTTGGTCCACCAGGAACAGGTAAAACAATGATTGGGAAAGCTATAGCTGGAGAGGCTAAAGCAACATTTTTCTACATATCTGCCAGTTCATTGACAAGCAAGTGGATTGGTGAGGGTGAAAAGCTAGTGAGGGCTCTTTTTGGAGTTGCCAGTTGCCGCCAGCCTGCTGTAATATTTGTTGATGAAATAGATTCACTTCTGTCTCAGCGCAAGTCAGAAGGTGAGCATGAATCAAGTAGACGGCTCAAAACTCAGTTTCTCATTGAAATGGAAGGCTTTGACAGTGGGAGTGAGCAAATTCTGCTTATAGGAGCAACTAATAGACCCCAGGAACTTGATGAAGCAGCAAGGAGGCGACTTACCAAGCGACTCTATATTCCCCTCCCTTCTTCAGAGGCAAGAGCATGGATCATACGAAACCTCTTAGAGAAGGATGGATTATTTAAGCTTTCAAAGGAGCATATTGATACCATATGCAAGTTAACTGAAGGGTATTCAGGATCAGATATGAAGAACTTGGTGAAGGATGCATCTATGGGCCCACTGAGAGAAGCTCTGAGGCAGGGCATAGAAATCACAAAGCTGAAAAAGGAGGATATGAGGCCAGTAACTCTTCAGGACTTTGAGAGTGCTTTGCAAGAGGTGAGGCCCTCTGTTTCTTTGAATGAACTTGGTACATATGATGATTGGAACAAACAATTTGGAAGTTTGTCACTCTAG 1740 0.4299 MVMVSALYAFSQAFEQAGRVPGRVFGMRGDIDIEKIKQSKYFRALLQQSKGGAANELVDQLGRQDQLSFKASKVLTQSKLISLYGNDKSSYKSSMHSKSNSSEDCVIVEKAHSYHSHPKGQGASAFLKVEEEERAHGNGLGTKRGHMEISSPGNDIAKSPSSNEETQNDGFGKGFVTARAKLEMDARQRRGSAGSPSASVSPQSDNNFTSRGYGAKSYGFPRRGIRGNFVPPIRSNGGNASNMTSQIAGKGDDALDDSTKRCLEMLYGPDGEVPEKLRNLEPRLIEHVSNEIMDRDPNVRWDDIAGLEHAKKCVTEMVIWPLLRPDIFKGCRSPGRGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQRKSEGEHESSRRLKTQFLIEMEGFDSGSEQILLIGATNRPQELDEAARRRLTKRLYIPLPSSEARAWIIRNLLEKDGLFKLSKEHIDTICKLTEGYSGSDMKNLVKDASMGPLREALRQGIEITKLKKEDMRPVTLQDFESALQEVRPSVSLNELGTYDDWNKQFGSLSL* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1424 579 SMART AAA_5 334 470 IPR003593 GO:0016887
Vvi14g1424 579 MobiDBLite consensus disorder prediction 154 170 - -
Vvi14g1424 579 FunFam Fidgetin-like 1 297 479 - -
Vvi14g1424 579 Pfam ATPase family associated with various cellular activities (AAA) 338 468 IPR003959 GO:0005524|GO:0016887
Vvi14g1424 579 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 297 574 IPR027417 -
Vvi14g1424 579 Gene3D - 297 571 IPR027417 -
Vvi14g1424 579 PANTHER AAA DOMAIN-CONTAINING 113 576 - -
Vvi14g1424 579 Gene3D - 469 555 - -
Vvi14g1424 579 MobiDBLite consensus disorder prediction 136 172 - -
Vvi14g1424 579 FunFam Fidgetin like 1 469 555 - -
Vvi14g1424 579 MobiDBLite consensus disorder prediction 185 214 - -
Vvi14g1424 579 MobiDBLite consensus disorder prediction 192 213 - -
Vvi14g1424 579 ProSitePatterns AAA-protein family signature. 440 459 IPR003960 GO:0005524|GO:0016887
Vvi14g1424 579 Pfam AAA+ lid domain 496 548 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1424 Vvi-Chr14 25724750 25731560 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1424 253 577 Calmodulin-binding Proteins AT3G56690 31.343 5.66e-43 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1424 K22766 - vvi:100256552 1082.01