Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1390 ATGGGGAGAGGAAAGTTCCAGCTGAAACGAATCGAGAACAAGAACAATCGGCAGGTGACTTTCTCAAAGCGACGAAGCGGAATGATGAAGAAAGCTCACGAACTATCTATTCTATGTGACGTTGATCTTGCTCTGATCATCTTCTCCGCCAGAGGCAGGCTTTACGAATTCTGTAGTGGCAATAGGAAAGGATAA 195 0.4513 MGRGKFQLKRIENKNNRQVTFSKRRSGMMKKAHELSILCDVDLALIIFSARGRLYEFCSGNRKG* 65
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1390 64 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi14g1390 64 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi14g1390 64 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi14g1390 64 CDD MADS_MEF2_like 2 59 IPR033896 GO:0000977|GO:0045944
Vvi14g1390 64 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi14g1390 64 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi14g1390 64 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 61 - -
Vvi14g1390 64 SUPERFAMILY SRF-like 1 61 IPR036879 GO:0003677|GO:0046983
Vvi14g1390 64 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi14g1390 64 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi14g1390 64 Gene3D - 13 63 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1390 Vvi-Chr14 25510046 25511038 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1390 1 60 MADS-box Gene Family AT2G03710 73.333 4.20e-29 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vvi14g1390 SRF-TF 1.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1390 K09264 - vvi:100241171 125.176