Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1388 ATGGAGTGGAACTTACAGCCATCCACTTGGGATTTAATTGAATTGAATCAAGAAAAGGATCCCTATATGCCCACCACGGTTGGTTCTGGTACCTTATTAGGGCAGAAGACTAAAGAAAAATTTTCAGTTGATTTGAAGCTTGGAAGATTGGGGGATTTGGGAGACGGGTCCACAGATAAATTCAAGGACTCTAAGTCCTTGAGGGTTTCATCACCTTCAGGGTCATCAAGGAGGGCTAGAGCTCTAAATGGAACTCAGAATGTGTCATGCTTAGTTGATGGGTGCACTTCCGACCTACGTAATTGCAGGGAGTATCATCGACGCCATAGGGTATGTGAGCGTCATTCTAAAACCCCAGTTGTCATCATTGGCGGTCAAGAAAAACGTTTCTGCCAGCAATGCAGCAGATTCCATTCCTTGGGGGAGTTTGATGAGGTAAAGAGAAGCTGCAGGAAACGCCTTGATGGACACAACCGGCGCCGAAGAAAAACTCAGCCAGAATCCTTTTACTTGGGATCTGGAAACTTTCTCTCCAATCACCAAGGTACAGGATTCTTGCAATTTGGAAGTTCACAGATGCTTACAACCTCTACTGCCAGCAGTCCCACATGGCCCCGGATTGCTAGAAGTGAGGAAGAAGCAATGTTTTACAATCATTGCCAACAGTTGCATGTCGGCCCAATTCCTTTTCCAAATTCAATGTACAACAGAGGAGGAGATAAAGAATTCCCCTTCTTGCAGGACAATGACCCCAAAATAAGCCACCTAGTAGTAGCCCCTGAAGTTCCCAACTTCCATCCAGTTCGTGTCCAGTCAAAAAATGGTAGGGCCAGCCATGAATTAACTCGACCAGCTTCCTCGGACTGTGCTTTCTCTCTTCTGTCATTGCCAGCAACACAATTCTCGGGGATCAGTTTAGCTCAGTTGCTGCATACCAATGCTACCCCTCCAGTTCAGACTATCAGCTCAGGCCCACATTGGTTCAATAATTTAGCTCAGGACTCATGCTCACAGGTTATAGAGAGCATGCCAATCAGTCCAGTTTTGGTTCCTGTCGACACCACCAAGGCGAACGACCATTGCAACACAATGTTTCATATGGGATCAAGTGGGTTGTCAGAAAATGAGCCCTCATGA 1137 0.4617 MEWNLQPSTWDLIELNQEKDPYMPTTVGSGTLLGQKTKEKFSVDLKLGRLGDLGDGSTDKFKDSKSLRVSSPSGSSRRARALNGTQNVSCLVDGCTSDLRNCREYHRRHRVCERHSKTPVVIIGGQEKRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKTQPESFYLGSGNFLSNHQGTGFLQFGSSQMLTTSTASSPTWPRIARSEEEAMFYNHCQQLHVGPIPFPNSMYNRGGDKEFPFLQDNDPKISHLVVAPEVPNFHPVRVQSKNGRASHELTRPASSDCAFSLLSLPATQFSGISLAQLLHTNATPPVQTISSGPHWFNNLAQDSCSQVIESMPISPVLVPVDTTKANDHCNTMFHMGSSGLSENEPS* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1388 378 Pfam SBP domain 90 163 IPR004333 GO:0003677
Vvi14g1388 378 MobiDBLite consensus disorder prediction 59 80 - -
Vvi14g1388 378 FunFam Squamosa promoter-binding-like protein 14 81 151 - -
Vvi14g1388 378 Gene3D - 81 151 IPR036893 GO:0003677|GO:0005634
Vvi14g1388 378 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 53 322 IPR044817 GO:0003677
Vvi14g1388 378 SUPERFAMILY SBT domain 88 169 IPR036893 GO:0003677|GO:0005634
Vvi14g1388 378 ProSiteProfiles Zinc finger SBP-type profile. 87 164 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1388 Vvi-Chr14 25486818 25489754 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1388 1 250 SBP-box Gene Family AT5G50670 44.765 2.47e-55 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vvi14g1388 SBP 2.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1388 - - vvi:100241234 763.451