Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1385 ATGCCGGTTGCAGAAAGCTACAAGGATGGGTGGGCTAGGGTCAGGCGTCGGGTTGAGAATCGTACTTGGATTGGGATAGATTTGGAAGGCTTTGTGAGGACTTTACCTTGGACTAGTGGGGAAGTGTGCTTGAAGTATCAGTTACCTGGTGAAGATCTCAACGCTTTAATCTCGGTTACCAACGATGAGGATCTTGAACACATGATGCTCGAGTACGATTGA 222 0.4775 MPVAESYKDGWARVRRRVENRTWIGIDLEGFVRTLPWTSGEVCLKYQLPGEDLNALISVTNDEDLEHMMLEYD* 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1385 73 Pfam PB1 domain 41 73 IPR000270 GO:0005515
Vvi14g1385 73 SUPERFAMILY CAD & PB1 domains 37 73 - -
Vvi14g1385 73 PANTHER OS05G0427100 PROTEIN-RELATED 38 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1385 Vvi-Chr14 25442076 25442297 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1385 44 72 MAP Kinase Kinase Kinase AT1G04700 75.862 1.77e-09 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1385 - - vri:117909150 154.451