Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1380 ATGGATCCCAAGGGCTCAAAGCAGCCGCAGGAGGTACCAAACTTCTTGAGCCTACCTCAGCCAAACATGGGAGAGAACAAGCCAGCTGAAGTGAAGGACTTTCAGATTGTGATTGCAGATAAGGAAGAGGGTAAGAAGCAGTTGGCCCCCAAGAGGAGCTCAAACAAGGACAGGCACACCAAGGTTGAAGGCAGAGGGAGGAGAATAAGGATGCCGGCTCTTTGTGCAGCCAGAATTTTTCAGTTGACTAGGGAATTGGGTCACAAATCTGACGGGGAAACCATACAGTGGTTGTTGCAGCAGGCCGAGCCGTCCATAATAGCGGCCACTGGTACTGGGACAATACCGGCGTCGGCTTTAGCGGCGGCAGGAGGCTCTGTGTCGCAACAGGGAACTTCTATATCAGCAGGATTGCATCAAAAGATTGATGAATTGGGGGGGTCCAGTATTGGGTCAGGGAGTAGTAGGACCAGTTGGGCAATGGTAGGTGCAAATTTGGGGAGACCCCATGTGGCCACAGGGCTATGGCCCCCAGTCAGTGGTTTTGGGTTTCAGTCATCATCTGGACCATCAACCACCAATTTGGGGAATGAAAGTTCCAATTATCTGCAAAAAATTGCCTTCCCTGGGTTTGACTTGCCTGCAACAAATCTGGGTCCTATGAGTTTTACTTCAATTTTGGGTGGGAGTAACCAGCAGCTTCCTGGTTTGGAGCTGGGCCTATCACAGGATGGTCATATTGGGGTTTTGAACTCACAAGCCTTAAGCCAGATTTACCAGCAGATGGGGCAGGCCAGGGTGCACCAGCAACAGCAGCATCAACATCAGCATCAGCATCAGCATCAACAGCAACCTCCTGCTAAGGATGATTCTCAAGGTTCAGGGCAGTAG 891 0.5095 MDPKGSKQPQEVPNFLSLPQPNMGENKPAEVKDFQIVIADKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGGSVSQQGTSISAGLHQKIDELGGSSIGSGSSRTSWAMVGANLGRPHVATGLWPPVSGFGFQSSSGPSTTNLGNESSNYLQKIAFPGFDLPATNLGPMSFTSILGGSNQQLPGLELGLSQDGHIGVLNSQALSQIYQQMGQARVHQQQQHQHQHQHQHQQQPPAKDDSQGSGQ* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1380 296 Pfam TCP family transcription factor 54 251 IPR017887 -
Vvi14g1380 296 MobiDBLite consensus disorder prediction 34 64 - -
Vvi14g1380 296 ProSiteProfiles TCP domain profile. 55 109 IPR017887 -
Vvi14g1380 296 MobiDBLite consensus disorder prediction 261 296 - -
Vvi14g1380 296 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 32 287 IPR005333 GO:0003700
Vvi14g1380 296 MobiDBLite consensus disorder prediction 1 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1380 Vvi-Chr14 25396768 25397658 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1380 1 296 TCP Transcription Factor Family AT3G27010 57.538 4.08e-88 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vvi14g1380 TCP 2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1380 - - vvi:100253170 530.02