Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1376 ATGGCTCCAAAGAAAGGAGTAAAAGCACCAGCAGCATTAGCCAAGAAGAAACAGGAGAAGGTAGTGAATCCCTTGTTCGAGAAACGTCCAAAGCAGTTTGGAATAGGAGGGGCATTGCCTCCAAAGAGGGATCTTAGCCGGTTTGTGAAATTTCCGAAGCATGTTCAGATTCAGAGGAAGAGACGAATCCTCAAGCAGCGGTTGAAGGTTCCCCCAGCTCTGAACCAATTTACCAAGACCCTTGACAAGAACCTTGCAACAAGCCTGTTCAAGATGCTTCTTAAGTACAGGCCTGAAGACAAAGCAGCAAAGAAGGAGCGTCTCTTGAAAAGGGCTCAGGCTGAGGCTGAAGGGAAAACCGCTGAGACCAAGAAGCCTATTGTTGTGAAATATGGTCTCAATCATGTGACCTACCTTATTGAGCAGAACAAAGCACAATTAGTAGTTATTGCGCATGATGTGGACCCTATAGAGTTGGTTGTTTGGCTTCCTGCATTATGCAGGAAGATGGAAATCCCATACTGCATTGTCAAGGGAAAATCTCGCTTGGGATCGTCAAGAACGAAGATAAATTGGAGTTCAGCAAAATCTTGGAGGCTATCAAGGCAAACTTCAATGATAAGTACGATGAAAATAGGAAGAAGTGGGGTGGTGGGATCATGGGTTCCAAGTCCCAGGCTAGAACTAAGGCTAAAGAGAGGCTTGTTGCCAAGGAAGCCGCCCAGAGGATGA 732 0.4604 MAPKKGVKAPAALAKKKQEKVVNPLFEKRPKQFGIGGALPPKRDLSRFVKFPKHVQIQRKRRILKQRLKVPPALNQFTKTLDKNLATSLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTAETKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSSRTKINWSSAKSWRLSRQTSMISTMKIGRSGVVGSWVPSPRLELRLKRGLLPRKPPRG* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1376 243 Gene3D - 51 205 IPR029064 -
Vvi14g1376 243 PRINTS Ribosomal protein L7A family signature 30 47 IPR001921 -
Vvi14g1376 243 PRINTS Ribosomal protein L7A family signature 91 104 IPR001921 -
Vvi14g1376 243 PRINTS Ribosomal protein L7A family signature 67 86 IPR001921 -
Vvi14g1376 243 PRINTS Ribosomal protein L7A family signature 47 64 IPR001921 -
Vvi14g1376 243 PRINTS Ribosomal protein L7A family signature 125 145 IPR001921 -
Vvi14g1376 243 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 43 189 - -
Vvi14g1376 243 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 116 186 IPR004038 -
Vvi14g1376 243 Coils Coil 102 122 - -
Vvi14g1376 243 ProSitePatterns Ribosomal protein L7Ae signature. 167 184 IPR004037 GO:0042254|GO:1990904
Vvi14g1376 243 PRINTS Ribosomal protein L7A/RS6 family signature 174 188 IPR018492 -
Vvi14g1376 243 PRINTS Ribosomal protein L7A/RS6 family signature 129 143 IPR018492 -
Vvi14g1376 243 PRINTS Ribosomal protein L7A/RS6 family signature 148 161 IPR018492 -
Vvi14g1376 243 PRINTS Ribosomal protein L7A/RS6 family signature 164 174 IPR018492 -
Vvi14g1376 243 SUPERFAMILY L30e-like 89 186 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1376 Vvi-Chr14 25338808 25341994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1376 1 185 Cytoplasmic Ribosomal Protein Gene Family AT3G62870 85.946 6.39e-114 325