Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1370 ATGGATTCAAACTCCTGGAACTCAGCCTCTTCACGTGGGTCCGATTGTTTTCAAGTGTTCGACCCATTCTCGCATAATACAGGAGGGGATAGAGGGGTTGTGCGAGGTGGGTCTTTGGTGTTGGATTCTGACAGAGGAGAGCTCGTGAAGGCTCCGGTCATAAAGGTGAAAAAGGAGGTGCCGGAGGCGAAGGCTATGGCGGCTTTGAAGAGTCATAGCGACGCCGAGAGGAGAAGAAGAGAGAGAATCAATGCTCATCTGGATACGCTTCGCGGCTTCGTGCCATGCACTGAAAAGATGGACAAAGCTACATTGCTTGCTGAAGTTATCCAGCAAGTGAAAGAACTAAAAAGGAATGCCACCAAAGCAAGTAAAGGATTACTCCTTCCAATAGAAGAAGATGAAGTAAGAGTAGAACCACATGATGACAGAACAGATGGAGCTTTTTCTTTGAGGGCATCTGTGTGTTGCGATTACCGACCTGAGCTTCTATCTTATATAAAACAAGCTCTTGACACCCTTCCTATAAATACAGTAAAGGCCGAGATCTCTACTTTGGGAGGACGGATGAAAAATGTATTTGTTTTCACCAGCTGCAAACAAGGGAACAGCAATGATTCCAAGGCACACATGCTTCTTGCAAGCTCTGTCCACCAGGCCCTGAGTTCTATCCTGTATAAAGTTTCCACCTCACCAGAATTCTCTCCAAGAACAACACATCCAAAGAAGCGACGAAGGGTTTCCATTTTTGATTCTTCGAGCTCCTCTTCTTCAGAGCAGAGATTTTGGTGA 792 0.4596 MDSNSWNSASSRGSDCFQVFDPFSHNTGGDRGVVRGGSLVLDSDRGELVKAPVIKVKKEVPEAKAMAALKSHSDAERRRRERINAHLDTLRGFVPCTEKMDKATLLAEVIQQVKELKRNATKASKGLLLPIEEDEVRVEPHDDRTDGAFSLRASVCCDYRPELLSYIKQALDTLPINTVKAEISTLGGRMKNVFVFTSCKQGNSNDSKAHMLLASSVHQALSSILYKVSTSPEFSPRTTHPKKRRRVSIFDSSSSSSSEQRFW* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1370 263 CDD ACT_UUR-ACR-like 154 221 - -
Vvi14g1370 263 Gene3D - 63 125 IPR036638 GO:0046983
Vvi14g1370 263 PANTHER TRANSCRIPTION FACTOR BHLH30 40 253 IPR045847 GO:0003700|GO:0006355
Vvi14g1370 263 CDD bHLH_AtAIG1_like 62 140 - -
Vvi14g1370 263 Pfam Helix-loop-helix DNA-binding domain 71 116 IPR011598 GO:0046983
Vvi14g1370 263 Coils Coil 106 126 - -
Vvi14g1370 263 SMART finulus 73 122 IPR011598 GO:0046983
Vvi14g1370 263 MobiDBLite consensus disorder prediction 231 263 - -
Vvi14g1370 263 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 67 116 IPR011598 GO:0046983
Vvi14g1370 263 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 71 121 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1370 Vvi-Chr14 25280932 25283918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1370 33 262 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 38.034 8.57e-35 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi14g1370 HLH 6.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1370 - - vvi:100242889 489.96